View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_36 (Length: 310)
Name: NF0915_low_36
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 36074959 - 36075230
Alignment:
| Q |
28 |
cacttagctgaggaacctaaatcttctatagcatctaaacctatgttgtacttgggaatgaaacttaaatcttcagtagcatttggacctccgttgcact |
127 |
Q |
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| T |
36074959 |
cacttagctgaggaacctaaatcttctatagcatctaaacctatgttgtacttgggaatgaaacttaaatcttcagtaacatttggacctccgttgcact |
36075058 |
T |
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| Q |
128 |
tatgtgaaccttcagtagcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaact |
227 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
36075059 |
tatgtgaaccttcggtagcatctggacctccgttacatttagaaggggaacctaaatcttcggtagcatctgaacctccattatatttagatggaaaact |
36075158 |
T |
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| Q |
228 |
taaatcttcgatagcagctggacctccattgcatctaagagaagaatctaaatcttcggtagcatcatctct |
299 |
Q |
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| T |
36075159 |
taaatcttcgatagcagctggacctccattgcatctaggaggagaatcaaaatcttcggtagcatcatctct |
36075230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 293
Target Start/End: Original strand, 36146394 - 36146599
Alignment:
| Q |
88 |
aaacttaaatcttcagtagcatttggacctccgttgcacttatgtgaaccttcagtagcatctgaacctccgttacatttagaaggggaacctaaatctt |
187 |
Q |
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| T |
36146394 |
aaacctaaatcttcggtaacatctgggcctccattgcactttggcgaaccttcgatagcatctagatctccattgcacttaggaggagaacctaaatctt |
36146493 |
T |
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| Q |
188 |
cggtagcatctggacctccattatatttagatgggaaacttaaatcttcgatagcagctggacctccattgcatctaagagaagaatctaaatcttcggt |
287 |
Q |
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| T |
36146494 |
cggtagcatcttgacctccattgcatttagatggggaacttaaattttcggtaacatctgaacctccattgcacttagaaggggaatctaaatcttcggt |
36146593 |
T |
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| Q |
288 |
agcatc |
293 |
Q |
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| |||| |
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| T |
36146594 |
aacatc |
36146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 36146548 - 36146600
Alignment:
| Q |
146 |
catctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatct |
198 |
Q |
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| T |
36146548 |
catctgaacctccattgcacttagaaggggaatctaaatcttcggtaacatct |
36146600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 285
Target Start/End: Complemental strand, 26530717 - 26530575
Alignment:
| Q |
142 |
gtagcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaacttaaatcttcgatag |
241 |
Q |
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||||||| ||||||||| || || ||| | ||| |||| |||||||||| |||||||| ||||||| | | |||| |||||||| |||||||| | ||| |
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| T |
26530717 |
gtagcatttgaacctccattgcacttata-gggaaacccaaatcttcggcagcatctgaacctccaatgcacttaggtgggaaacctaaatcttgggtag |
26530619 |
T |
|
| Q |
242 |
cagctggacctccattgcatctaagagaagaatctaaatcttcg |
285 |
Q |
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|| || ||||||||||||| || ||| ||| ||||||||||| |
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| T |
26530618 |
catctagacctccattgcacttaggaggggaacctaaatcttcg |
26530575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 26530668 - 26530572
Alignment:
| Q |
144 |
agcatctgaacctccgttacatttagaaggggaacctaaatcttcggtagcatctggacctccattatatttagatgggaaacttaaatcttcgata |
240 |
Q |
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||||||||||||||| | || |||| ||| |||||||||||| |||||||||| |||||||||| | |||| ||| ||| ||||||||||||| |
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| T |
26530668 |
agcatctgaacctccaatgcacttaggtgggaaacctaaatcttgggtagcatctagacctccattgcacttaggaggggaacctaaatcttcgata |
26530572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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