View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_39 (Length: 306)
Name: NF0915_low_39
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 248
Target Start/End: Original strand, 39286180 - 39286360
Alignment:
| Q |
71 |
cacacttcaccagcaatatcacaaagattttttgtggtag---tctatgcctctatggtagatatattagagttgattattttggttaggcacattcgaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286180 |
cacacttcaccagcaatatcacaaagattttttgtggtagtagtctatgcctctatggtagatatattagagttgattattttggttaggcacattcgaa |
39286279 |
T |
|
| Q |
168 |
cgtgcattccttgtgctgttgtttattatagcaaaatatactttacatattaagctaacattattaacagaaccgaatctg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39286280 |
cgtgcattccttgtgctgttgtttattatagcaaaatatactttacatattacgctaacattattaacagaaccgaatctg |
39286360 |
T |
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