View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0915_low_5 (Length: 573)
Name: NF0915_low_5
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 53 - 538
Target Start/End: Complemental strand, 39003877 - 39003392
Alignment:
| Q |
53 |
cctacgttatattcttttggtttaaagtgagtcatattgtttcgagaactagctaattaaccacataagtgctacttattttaaatatcctatcaaaaac |
152 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39003877 |
cctacattatattcttttggtttaaagtgagtcatattgtttcgagaactagctaattaaccacataagtgctacttattttaaatatcctatcaaaaac |
39003778 |
T |
|
| Q |
153 |
gtaaaatataaaatttgtatttaggtttgtgtnnnnnnnn-ttgttctcttttgttgggatatcgagcttcgaacaatcattttcttttttgaagaaagc |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||| |
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| T |
39003777 |
gtataatataaaatttgtatttaggtttgtgtaaaaaaaaattgttctcttttgttgggacatcgagcttcgaacaatcatttt--tttttaaaggaagc |
39003680 |
T |
|
| Q |
252 |
tttgaataatcatataagtgagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacattta |
351 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39003679 |
ttcgaacaatcatataagtgagagaaacaccacattttaactcaaaatcttaagacattaggttattgggtcatctcacttatataatgttcaacattta |
39003580 |
T |
|
| Q |
352 |
cattttcatctgatgtcaaacatattactcacatttgatacactaataatctccaatttattaggaggtggataaagtttctcacattgttttatgtgtt |
451 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
39003579 |
cattttcatccgatgtcagacatattactcacatttgatacaccaatactcttcaatttattaggaggtggataaagtttctcacattgttttatgtctt |
39003480 |
T |
|
| Q |
452 |
tatctgatgtggcatgaatccttcgatttt-ggaaaattaagatcataattggttttcttgagaaaattataatatttattttttgaa |
538 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39003479 |
tatctgatgtggcatgaatccttcgattttgggaaaattgagatcataattggttttcttgagaaaattataatatttattttttgaa |
39003392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 18091183 - 18091081
Alignment:
| Q |
248 |
aagctttgaataatcatataagtgagagaaacaccacattttaa-ctcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaac |
346 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||| || |||||||| | ||||||||||| |||||||| |||||| |
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|
| T |
18091183 |
aagccttgaacaatcatataagtgagagaaacaccacattttaatataaaaaccttaagatattaggtttataggtcatctcacatataaaatattcaac |
18091084 |
T |
|
| Q |
347 |
att |
349 |
Q |
| |
|
||| |
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|
| T |
18091083 |
att |
18091081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 47508127 - 47508257
Alignment:
| Q |
267 |
aagtgagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttacattttcatctgatg |
366 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || | ||||||||| || ||||||||||||||||| |||| ||||||||| ||| |||| ||| |
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|
| T |
47508127 |
aagtgagagatacaccactttttaactcaaaactataaggcattaggtttatgagtcatctcacttataaagtgttgaacatttacttttccatccgata |
47508226 |
T |
|
| Q |
367 |
tcaaacatattactcacatttgatacactaa |
397 |
Q |
| |
|
| | |||||||||||||| |||||| ||||| |
|
|
| T |
47508227 |
taagacatattactcacacttgatatactaa |
47508257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 25991522 - 25991402
Alignment:
| Q |
271 |
gagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttacattttcatctgatgtcaa |
370 |
Q |
| |
|
|||||| | |||||| |||||| ||||| |||| | ||||||||| | ||| |||||||||||||||||| |||||| || | || || |||||| |
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|
| T |
25991522 |
gagagagagaccacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaaatgtttaacattaacttgtttatttgatgtggg |
25991423 |
T |
|
| Q |
371 |
acatattactcacatttgata |
391 |
Q |
| |
|
|||||||||||||| |||||| |
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|
| T |
25991422 |
acatattactcacacttgata |
25991402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 391
Target Start/End: Original strand, 883596 - 883734
Alignment:
| Q |
253 |
ttgaataatcatataagtgagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttac |
352 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||| |||||| |||| |||| ||||||| |||| || ||| |||||||||||||||| | | |||| || |
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|
| T |
883596 |
ttgaataatcatataagtgagaaagacactacactttaacctaaaaccttaagacattaagttaatgagtcctctcacttataaaatgattagcattaac |
883695 |
T |
|
| Q |
353 |
attttcatctgatgtcaaacatattactcacatttgata |
391 |
Q |
| |
|
|||||||||||| | | |||| ||| ||||| |||||| |
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|
| T |
883696 |
tttttcatctgatatgagacattttagtcacacttgata |
883734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 11400753 - 11400648
Alignment:
| Q |
253 |
ttgaataatcatataagtgagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttac |
352 |
Q |
| |
|
||||| |||||||||||||||||| | || || |||||||||||| |||| ||||||| ||| | ||||||||||||||||||||||||||||| || |
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|
| T |
11400753 |
ttgaacaatcatataagtgagagagatgccgcactttaactcaaaaccttaagacattaagtttatatgtcatctcacttataaaatgttcaacattcac |
11400654 |
T |
|
| Q |
353 |
attttc |
358 |
Q |
| |
|
||||| |
|
|
| T |
11400653 |
tttttc |
11400648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 38008883 - 38008827
Alignment:
| Q |
277 |
aacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcactta |
333 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| ||| ||||||||||| |||| |
|
|
| T |
38008883 |
aacaccacatttttacccaaaatcttaagacattaagtttgtgggtcatctctctta |
38008827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 44043812 - 44043892
Alignment:
| Q |
272 |
agagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttac |
352 |
Q |
| |
|
||||| |||||||| | | || |||||||||| |||| | |||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
44043812 |
agagagacaccacactcttacccaaaatcttaagacaatgggtttatgggtcatcttacttataaggtgttcaacatttac |
44043892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 9694391 - 9694459
Alignment:
| Q |
277 |
aacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaac |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||| || |||||||||||||||| ||||||||| |
|
|
| T |
9694391 |
aacaccacattttaactcaaaatcttaagacatttgatta-tgagtcatctcacttataagatgttcaac |
9694459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 34218055 - 34218190
Alignment:
| Q |
253 |
ttgaataatcatataagtgagagaaacaccacattttaactcaaaatcttacgacattaggttattgggtcatctcacttataaaatgttcaacatttac |
352 |
Q |
| |
|
||||| || |||| ||| |||||| |||||||| | | || ||||| |||| |||| | |||| || ||| |||||||||||| |||||||||||||| |
|
|
| T |
34218055 |
ttgaacaaccatacaagcgagagagacaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttataaggtgttcaacatttac |
34218154 |
T |
|
| Q |
353 |
attttcatctgatgtcaaacatattactcacatttg |
388 |
Q |
| |
|
|||| ||| ||||| | |||||| ||||||||||| |
|
|
| T |
34218155 |
ttttttatccgatgtgagacatataactcacatttg |
34218190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 44358159 - 44358229
Alignment:
| Q |
321 |
gtcatctcacttataaaatgttcaacatttacattttcatctgatgtcaaacatattactcacatttgata |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||| ||||||||| | |||| ||||| ||| |||||| |
|
|
| T |
44358159 |
gtcatctcacttataaaatggtcaacattcacttttttatctgatgtgagacatgttactgacacttgata |
44358229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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