View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_51 (Length: 253)
Name: NF0915_low_51
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 22919398 - 22919154
Alignment:
| Q |
4 |
atgtagacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatatattatgaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22919398 |
atgtagacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatagattatgaa |
22919299 |
T |
|
| Q |
104 |
atataaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttaga-----aatttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
22919298 |
atataaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttcgaaatttaatttt |
22919199 |
T |
|
| Q |
199 |
ttaacaagtaaatagagcaaaaacattttacttggcagctctgtg |
243 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22919198 |
ttaacaagtaaatagagcaaaaacattttacgtggcagctctgtg |
22919154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3523538 - 3523310
Alignment:
| Q |
1 |
tcgatgtagacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatatattat |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
3523538 |
tcgatgtagacttttggttcgaatgtactcatctctatctattgatcaatgaatgttatttctaatatgtttttatgagtaacaagtaaatatagattat |
3523439 |
T |
|
| Q |
101 |
gaaatataaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttaga-----aat |
195 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||| |
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| T |
3523438 |
gaaatataaatggtgcatggactagcatattctgtgaagtaaaatgtgtatccttctttagaagttgcacttatagatcaaacctttttcgaaatttaat |
3523339 |
T |
|
| Q |
196 |
tttttaacaagtaaatagagcaaaaacat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3523338 |
tttttaacaagtaaatagagcaaaaacat |
3523310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 43787958 - 43787908
Alignment:
| Q |
193 |
aattttttaacaagtaaatagagcaaaaacattttacttggcagctctgtg |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
43787958 |
aattttttaacaagtaaatagagcaaaaacattatacttggcagctctgtg |
43787908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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