View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0915_low_52 (Length: 252)
Name: NF0915_low_52
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0915_low_52 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 3911961 - 3912160
Alignment:
| Q |
53 |
taaacacataatcttcttgaatttgtgggtttaatggtcaattaaaactaaatcgatttttaattataagaaaatgaggagtttgtggcttaaaaatcga |
152 |
Q |
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| T |
3911961 |
taaactcataatcttcttgaatttgtgggtttaatggtcaattaaaactaaatcgatttttaattataagaaaatgaggagtttatggcttaaaaatcga |
3912060 |
T |
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| Q |
153 |
taaacagtttttgttcttannnnnnnaatttaaaagaaaaaatatgtacttcacatctactactgatatattgaatttaatggccttcaaagttcagtaa |
252 |
Q |
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| T |
3912061 |
taaacagttttttattttatttttttaatttaaaagaaaaaatatgtacttcacatctactactgatatattgaatttaatggccttcaaagttcagtaa |
3912160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34899975 - 34899921
Alignment:
| Q |
7 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacat |
61 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacat |
34899921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 41404491 - 41404543
Alignment:
| Q |
53 |
taaacacataatcttcttgaatttgtgggtttaatggtcaattaaaactaaat |
105 |
Q |
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| T |
41404491 |
taaactcataattttcttaattttgtaggtttaatcgtcaattaaaactaaat |
41404543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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