View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0915_low_61 (Length: 218)

Name: NF0915_low_61
Description: NF0915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0915_low_61
NF0915_low_61
[»] chr7 (3 HSPs)
chr7 (1-128)||(40508865-40508992)
chr7 (49-128)||(4299166-4299246)
chr7 (1-41)||(22114382-22114422)
[»] chr1 (2 HSPs)
chr1 (7-106)||(14477383-14477483)
chr1 (67-128)||(41872911-41872971)
[»] chr4 (3 HSPs)
chr4 (49-128)||(49343542-49343622)
chr4 (67-128)||(42809923-42809984)
chr4 (7-39)||(49343468-49343500)
[»] scaffold0201 (2 HSPs)
scaffold0201 (7-51)||(22042-22086)
scaffold0201 (94-128)||(22286-22320)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 40508992 - 40508865
Alignment:
Q  1 ttttgattttgatttctagaaattcatatgatgttacaattatggaaattcatggataaagaattcgtgttttgatttttgatgttgcacttctggaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40508992 ttttgattttgatttctagaaattcatgtgatgttacaattctggaaattcatggataaagaattcgtgttttgatttttgatgttgcacttctggaaat 40508893  T
Q  101 ttgtttctggaaatcatgtgatgttgtt 128  Q
    ||||||||||||||||||||||||||||    
T  40508892 ttgtttctggaaatcatgtgatgttgtt 40508865  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 4299246 - 4299166
Alignment:
Q  49 ttcatggataaag-aattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  4299246 ttcatggataaaggaattcgtgttttgatttttgatgttgcacttttggaaatttgtttatggaaatcatgtgatgttgtt 4299166  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22114422 - 22114382
Alignment:
Q  1 ttttgattttgatttctagaaattcatatgatgttacaatt 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22114422 ttttgattttgatttctagaaattcatgtgatgttacaatt 22114382  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 14477383 - 14477483
Alignment:
Q  7 ttttgatttctagaaattcatatgatgttacaattatggaaattcatggataaa-gaattcgtgttttgatttttgatgttgcacttctggaaatttgtt 105  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  14477383 ttttgatttctagaaattcatgtgattttacaattctggaaattcatggataaaggaattcgtgttttgatttttgatgttgcacttctgtaaatttgtt 14477482  T
Q  106 t 106  Q
    |    
T  14477483 t 14477483  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 41872971 - 41872911
Alignment:
Q  67 gtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 128  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  41872971 gtgttttgatttttgatgttccacttttggaaatttgtttct-gaaatcatgtgatgttgtt 41872911  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 49343542 - 49343622
Alignment:
Q  49 ttcatggataaag-aattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 128  Q
    ||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  49343542 ttcatggataaaggaattcatgttttgatttttgatgttgcatttttggaaatttgtttatggaaatcatgtgatgttgtt 49343622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 42809923 - 42809984
Alignment:
Q  67 gtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  42809923 gtgttttgatttttgatgttgcagttctggaaatttgtttctgaaaatcatgtgatgttgtt 42809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 49343468 - 49343500
Alignment:
Q  7 ttttgatttctagaaattcatatgatgttacaa 39  Q
    ||||||||||||||||||||| |||||||||||    
T  49343468 ttttgatttctagaaattcatgtgatgttacaa 49343500  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 22042 - 22086
Alignment:
Q  7 ttttgatttctagaaattcatatgatgttacaattatggaaattc 51  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||    
T  22042 ttttgatttctggaaattcatgtgatgttacaattctggaaattc 22086  T

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Target: scaffold0201; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 22286 - 22320
Alignment:
Q  94 tggaaatttgtttctggaaatcatgtgatgttgtt 128  Q
    |||||||||||||||| ||||||||||||||||||    
T  22286 tggaaatttgtttctgaaaatcatgtgatgttgtt 22320  T

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