View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0916_high_1 (Length: 663)
Name: NF0916_high_1
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 30 - 625
Target Start/End: Complemental strand, 33565701 - 33565113
Alignment:
| Q |
30 |
gttgatacttacttttggtatgatcattggttggagggtattcctctaaaggattgatttaagaggttgtttgagttttctatgaattagcgaatgttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33565701 |
gttgatacttacttttggtatgatcattggttggagggtattcctctaaaggattgatttaagaggttgtttgagttttctatgaattagcgaatgttag |
33565602 |
T |
|
| Q |
130 |
tggcaaatatgttctcttt-ggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgta |
228 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33565601 |
tggcaaatatgttctctttaggggcgggaagagggaggagagacttggaattgaaagcgtcagttgtttgcgttagagaaagagttggtaaaggagtgta |
33565502 |
T |
|
| Q |
229 |
ggctttacttaacaatgttactttacaggttagctgtagtgatcattttgacaatgaaaattagatccaggagtcgactataccaatgttactttacaat |
328 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||| |||||| ||||||||||||| |||||||||||| |
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| T |
33565501 |
ggctttacttaacaatgttactttacaggttagctctggtgatcattttgacaatgaaaactggattcaggagccgactataccaatattactttacaat |
33565402 |
T |
|
| Q |
329 |
gtttcttatgtaactcaatagtcggagaaattcatgcataaagcaaagtttaaaaaggtgaatttttaaccactaaattatttgacccnnnnnnnttatc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
33565401 |
atttcttatgtaactcaatagtcggagaaattcatgcataaggcaaagtttaaaaaggtgaatttttaaccactaaattatttgatccaaaaaagttatc |
33565302 |
T |
|
| Q |
429 |
cccccttaaattcaaagacataacacctttttaatatactaatacaatattagtcaagatattccctcnnnnnnnnnnnnntactattagtcaagacata |
528 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |
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|
| T |
33565301 |
cccccttaaattcaaagacataacacctttttaatatactaatacaatattagtcaagacattccctcaaaaaa--------aatattagtcaagacata |
33565210 |
T |
|
| Q |
529 |
tcggatgaccttgttacacgtcattaaannnnnnnnatctcttggatgcaggatagggaaaagtctaatgtggcataattctaatttctaggaaaca |
625 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33565209 |
tcggatgaccttgttacacgtcattaatttttttttatctcttggatgcaggatagggaaaagtctaatgtggcataattctaatttctaggaaaca |
33565113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 37039978 - 37039861
Alignment:
| Q |
136 |
atatgttctctttggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgtagg-cttt |
234 |
Q |
| |
|
||||||| || |||||||||||||||| || | ||| ||| ||||| |||| ||||||||| || ||| | ||||||||| |||||||||| |||| |
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|
| T |
37039978 |
atatgttttcgttggggcgggaagagggagccgttactgggagttggaggcgtaggttgtttgtgtgggaggaggagttggtaggggagtgtaggacttt |
37039879 |
T |
|
| Q |
235 |
acttaacaatgttacttt |
252 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
37039878 |
atttaacaatgttacttt |
37039861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 39529410 - 39529184
Alignment:
| Q |
35 |
tacttacttttggtatgatcattggttggagggtattcctctaaaggattgatttaagaggttgtttgagttttctatgaattagcgaatgttggtggca |
134 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||| ||||| | ||||||||||||||| | || ||||||||| || | ||| || || |
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|
| T |
39529410 |
tacttacttttggtttgatcattggttggggggtattcctctcaaggaacggtttaagaggttgtttaaattgtctatgaatcagtgggtgtcagtcaca |
39529311 |
T |
|
| Q |
135 |
aatatgttctctttggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgta-ggctt |
233 |
Q |
| |
|
||||||| ||||||||| || |||||| |||||||||||| |||| || |||||| ||||||| || | | | |||||||| ||||||| | ||||| |
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|
| T |
39529310 |
tatatgttttctttggggtggaaagagggaggagagacttgtaattagaggcgtcgattgtttgtgtgggtggagaagttggtagaggagtgcagggctt |
39529211 |
T |
|
| Q |
234 |
tacttaacaatgttactttacaggtta |
260 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
39529210 |
tacttaacaatgttactttacatgtta |
39529184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 15667662 - 15667829
Alignment:
| Q |
128 |
ggtggcaaatatgttctctttggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgt |
227 |
Q |
| |
|
|||||||| ||||||| |||| ||| |||||||| |||||| |||||| || || | || | ||||||| || ||| ||| |||| || | ||||| |
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|
| T |
15667662 |
ggtggcaattatgttccctttagggtgggaagagtggggagaggcttggagttagaggtgtagtttgtttgtgtgggaggaagggttgttagggtagtgt |
15667761 |
T |
|
| Q |
228 |
agg-ctttacttaacaatgttactttacaggttagctgtagtgatcattttgacaatgaaaattagatcc |
296 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||| | || ||||||| ||| |||||||||||||||| |
|
|
| T |
15667762 |
agggctttacttaacaatgttacttttcaggttaacagtggtgatca--ttggaaatgaaaattagatcc |
15667829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 26766820 - 26766881
Alignment:
| Q |
233 |
ttacttaacaatgttactttacaggttagctgtagtgatcattttgacaatgaaaattagatcc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||| |
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|
| T |
26766820 |
ttacttaacaatgttactttacaggttagcagtggtgatca--ttggcaatgaaaattagatcc |
26766881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 46632356 - 46632224
Alignment:
| Q |
129 |
gtggcaaatatgttctctttggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgt- |
227 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| | ||||| |||||| ||||| | | |||||||||||| ||| | |||| ||| ||||||| |
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|
| T |
46632356 |
gtggcaaatatgtttcctttggggtggtaagaggaatgagagtcttggacttggaggtctaggttgtttgcgtgggaggagaagttagtaggggagtgta |
46632257 |
T |
|
| Q |
228 |
aggctttacttaacaatgttactttacaggtta |
260 |
Q |
| |
|
||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
46632256 |
aggttttacttaacaatgttaatttccaggtta |
46632224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 43755045 - 43755073
Alignment:
| Q |
231 |
ctttacttaacaatgttactttacaggtt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
43755045 |
ctttacttaacaatgttactttacaggtt |
43755073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 32830810 - 32830884
Alignment:
| Q |
221 |
ggagtgtagg-ctttacttaacaatgttactttacaggttagctgtagtgatcattttgacaatgaaaattagatcc |
296 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||| | |||||||||||||| |
|
|
| T |
32830810 |
ggagtgtaggactttacttaacaatgttattttacaggttagcaacagtgatca--ttgatagtgaaaattagatcc |
32830884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 47690680 - 47690797
Alignment:
| Q |
146 |
tttggggcgggaagaggcaggagagacttggaattggaagcgtcggttgtttgcgttagagaaagagttggtaaaggagtgtagg-ctttacttaacaat |
244 |
Q |
| |
|
||||||| |||| ||| |||||| |||||||||||| |||||| || ||||| | ||| | || |||||| ||||||||| | | ||| |||||||| |
|
|
| T |
47690680 |
tttggggtaggaaaagggaggagatgcttggaattggacgcgtcgattctttgcatgggaggatgatttggtagaggagtgtaagacgttatttaacaat |
47690779 |
T |
|
| Q |
245 |
gttactttacaggttagc |
262 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47690780 |
gttactttacaggttagc |
47690797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 414
Target Start/End: Complemental strand, 31047383 - 31047353
Alignment:
| Q |
384 |
aggtgaatttttaaccactaaattatttgac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31047383 |
aggtgaatttttaaccactaaattatttgac |
31047353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 18520077 - 18520048
Alignment:
| Q |
378 |
ttaaaaaggtgaatttttaaccactaaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18520077 |
ttaaaaaggtgaatttttaaccactaaatt |
18520048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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