View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0916_high_4 (Length: 601)
Name: NF0916_high_4
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 49858546 - 49857973
Alignment:
| Q |
1 |
ctattacattcaatttagaaaagtattgaagagttttattacaaatttgaatattattcataaaccattttcacacgcttttggagaaccatagcctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858546 |
ctattacattcaatttagaaaagtattgaagagttttattacaaatttgaatattattcataaaccattttcacacgcttttggagaaccatagcctcct |
49858447 |
T |
|
| Q |
101 |
agagctctcccattcaaacatccaaactacgcatacttccttccggttcctgatgaacatagtcattcttaagcataagggagcaattcttaccatagga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858446 |
agagctctcccgttcaaacatccaaactacgcatacttccttccggttcctgatgaacatagtcattcttaagcataagggagcaattcttaccatagga |
49858347 |
T |
|
| Q |
201 |
aaactcattgatgaattctcattggttgctgataagcctataattgcacagttttattgtgtagtaaaagatattgatcccacaggagactagagttaat |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858346 |
aaactcattgatcaattctcattggttgctgataagcctataattgcacagttttattgtgtagtaaaagatattgatcccacaggagactagagttaat |
49858247 |
T |
|
| Q |
301 |
aaccaatctcctttactaagttaattaactaaaaaattgaatttttagattgagttggatttccatcacaaaatagaattttctatcccaagatcctatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49858246 |
aaccaatctcctttactaagttaattagctaaaaaattgaatttttagattgagttggatttccatcacaaaatagaattttctatcccaagctcctatg |
49858147 |
T |
|
| Q |
401 |
ttgctatgcaaattattgttatgaaatatttcttttatctt-atagatctaccatctacctttgtctttcaacaaagattgatacctcaaattatgaatt |
499 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858146 |
ttgccatgcaaattattgttatgaaatatttcttttatcttaatagatctaccatctacctttgtctttcaacaaagattgatacctcaaattatgaatt |
49858047 |
T |
|
| Q |
500 |
ataatgttatggttgttcaattcccttaaaaatgtttgattataactaaatgattgtttaatcatgtaatgtct |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49858046 |
ataatgttatggttgttcaattcccttaaaaatgtttgattataactaaatgattgtttaatcatgtaatgtct |
49857973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 26269579 - 26269637
Alignment:
| Q |
496 |
aattataatgttatggttgttcaattcccttaaaaatgtttgattataactaaatgatt |
554 |
Q |
| |
|
|||||||||||||| || |||| |||| |||||||||||| |||||||| |||||||| |
|
|
| T |
26269579 |
aattataatgttataattattcagttcctttaaaaatgttttattataaccaaatgatt |
26269637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 765 times since January 2019
Visitors: 6705