View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0916_low_11 (Length: 443)
Name: NF0916_low_11
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32467291 - 32467504
Alignment:
| Q |
1 |
tagtatggaatactgtgattgctgctcaatcttatgttgttgaacgataatgctcatgatggtcgatggaagacatgttgtcagttggagtaagccatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32467291 |
tagtatggaatactgtgattgctgctcaatcttatgttgttgaacgataatgctcatgatggtcgatggaagacatgttgtcagatggagtaagccatca |
32467390 |
T |
|
| Q |
101 |
ccaggaagggtaaactgtaatattatacttctttttcctcctttcacaacataatgattttctccatttatgatgtacatgttggagaagctcgtgactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32467391 |
tcaggaagggtaaactgtaatattatacttctttttcctcctttcacaacataatgattttctccatttatgatgtacatgttggagaagctcgtggctt |
32467490 |
T |
|
| Q |
201 |
actttcaactctta |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32467491 |
actttcaactctta |
32467504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 32467618 - 32467708
Alignment:
| Q |
332 |
ggttatgcttgtgttagaggacaaacaaataagatagtttaatagttaaagtttccttatctcaccatagcatttatatttttgatgatgt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32467618 |
ggttatgcttgtgttagaggacaaacaaataagatagtttaatagttaaagtttccttatctcaccatagcatttatattttttatgatgt |
32467708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 180 times since January 2019
Visitors: 6713