View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0916_low_12 (Length: 439)

Name: NF0916_low_12
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0916_low_12
NF0916_low_12
[»] chr3 (2 HSPs)
chr3 (78-439)||(31187727-31188088)
chr3 (389-438)||(43751792-43751841)
[»] chr5 (2 HSPs)
chr5 (78-229)||(24016097-24016251)
chr5 (387-439)||(28503271-28503323)
[»] chr7 (1 HSPs)
chr7 (390-438)||(3255158-3255206)
[»] chr6 (2 HSPs)
chr6 (388-438)||(20207190-20207240)
chr6 (388-438)||(22101213-22101263)
[»] chr2 (1 HSPs)
chr2 (389-438)||(10696380-10696429)
[»] chr1 (2 HSPs)
chr1 (389-430)||(434989-435030)
chr1 (387-431)||(7439097-7439141)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 78 - 439
Target Start/End: Original strand, 31187727 - 31188088
Alignment:
Q  78 atgaaacaacaaataggggatcgtggattcttgaaggaatgttagtgccatatattcgttgatttggactgatttttgtattttactctattaattaaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31187727 atgaaacaacaaataggggatcgtggattcttgaaggaatgttagtgccatatattcgttgatttggactgatttttgtattttactctattaattaaaa 31187826  T
Q  178 gcgattaaattgggtgtccaaaacattcctgtttaagccaattgctactataatgatcaaataaatataagtatattttgccaaaacatgtactacactc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31187827 gcgattaaattgggtgtccaaaacattcctgtttaagccaattgctactataatgatcaaataaatataagtatattttgccaaaacatgtaccacactc 31187926  T
Q  278 ataattcgttagagttatggttttcaactaaattattaagactgcttctttttccatcctataaatttctcacacactttatgcagtttgaattatacat 377  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  31187927 ataattcgttagagttatggttttcaactaaattattaagacggtttctttttccatcctataaatttctcacacgctttatgcagtttggattatacat 31188026  T
Q  378 tacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataa 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31188027 tacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataa 31188088  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 43751841 - 43751792
Alignment:
Q  389 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 438  Q
    ||||| ||||||||| | ||| |||||||||||||| |||||||||||||    
T  43751841 taaaatcttcaaaaacacgttaaaatattttagattttagaatccgaata 43751792  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 24016251 - 24016097
Alignment:
Q  78 atgaaacaacaaataggggatcgtggattcttgaaggaatg----ttagtgccatatattcgttgatttggactgatttttgtattttactctattaatt 173  Q
    |||||||||||||||||| || |||||||||||||||||||    | ||||||||||||||||||||||||||||| ||||| |||||| || |||||||    
T  24016251 atgaaacaacaaataggg-atagtggattcttgaaggaatgaatgtgagtgccatatattcgttgatttggactga-ttttgcattttattccattaatt 24016154  T
Q  174 aaaagcgattaaat-tgggtgtccaaaacattcctgtttaagccaattgctactata 229  Q
    |||| ||| |||||  |||||||||||||||| |||||||| |||||||||||||||    
T  24016153 aaaaacgagtaaatgggggtgtccaaaacatttctgtttaacccaattgctactata 24016097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 28503271 - 28503323
Alignment:
Q  387 cataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataa 439  Q
    ||||||||| || |||||| |||||||||||| ||||| |||||| |||||||    
T  28503271 cataaaaacctccaaaatacgttgaaatatttcagattttagaattcgaataa 28503323  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 3255158 - 3255206
Alignment:
Q  390 aaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 438  Q
    |||| |||||||||||  ||||||||||||||||| |||||||||||||    
T  3255158 aaaaccttcaaaaatatattgaaatattttagattttagaatccgaata 3255206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 20207190 - 20207240
Alignment:
Q  388 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 438  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 20207240  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 22101213 - 22101263
Alignment:
Q  388 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 438  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 22101263  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 10696380 - 10696429
Alignment:
Q  389 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 438  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||| ||||||    
T  10696380 taaaaccttcaaaaatacgttgaaatattttggattttagaattcgaata 10696429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 434989 - 435030
Alignment:
Q  389 taaaaacttcaaaaataggttgaaatattttagattatagaa 430  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  434989 taaaaacttcaaaaacatgttgaaatattttagattttagaa 435030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 7439097 - 7439141
Alignment:
Q  387 cataaaaacttcaaaaataggttgaaatattttagattatagaat 431  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||    
T  7439097 cataaaaccttcaaaaacacgttgaaatattttagattttagaat 7439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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