View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0916_low_13 (Length: 416)

Name: NF0916_low_13
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0916_low_13
NF0916_low_13
[»] chr2 (19 HSPs)
chr2 (93-406)||(32310833-32311158)
chr2 (93-248)||(28222281-28222436)
chr2 (93-248)||(28213848-28214003)
chr2 (255-406)||(28222465-28222616)
chr2 (226-406)||(28213660-28213838)
chr2 (229-385)||(32813370-32813526)
chr2 (93-325)||(32799246-32799490)
chr2 (229-374)||(32792578-32792723)
chr2 (234-371)||(32563727-32563864)
chr2 (93-178)||(32306703-32306788)
chr2 (229-329)||(32785109-32785210)
chr2 (93-178)||(32786354-32786439)
chr2 (93-178)||(32792737-32792822)
chr2 (93-178)||(32563903-32563987)
chr2 (93-145)||(32813598-32813650)
chr2 (339-406)||(32790307-32790374)
chr2 (323-373)||(28148180-28148230)
chr2 (288-358)||(28179344-28179414)
chr2 (288-320)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 93 - 406
Target Start/End: Original strand, 32310833 - 32311158
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt---gttaaatgt-t 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||   || | |  | |    
T  32310833 gttcatatatttcattctagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgt 32310932  T
Q  189 tacacaatttatagattttgatggtactgtgtt---aaatgtcta-----gtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgc 280  Q
    |||| ||||||| ||||||||||| |||| |||   |||||| ||     || ||||||||||||||||||||| || || ||||||||||||||||||     
T  32310933 tacagaatttattgattttgatggcactgggttgaaaaatgtttactttagtgttgcaaggctgcaataaatataaacaagtcaaagtgttctgttatgt 32311032  T
Q  281 cttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattatagatcaagaaatcattcttagttttga 380  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| | |||    
T  32311033 tttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaataaatgattcttagatatga 32311132  T
Q  381 tatttcaagtcacaattgcttctgtg 406  Q
    |||| |||||||||| ||||||||||    
T  32311133 tattgcaagtcacaactgcttctgtg 32311158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 28222281 - 28222436
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgtgttaaatgtttaca 192  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28222281 gttcatatatttcattctggcttagcaaattggttctcttcctatgtaagtttcttacacacatttgatggtagttttagccatgtgttaaatgtttaca 28222380  T
Q  193 caatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat 248  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28222381 gaatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat 28222436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 28214003 - 28213848
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgtgttaaatgtttaca 192  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28214003 gttcatatatttcattctggtttagcaaatttgttctcttcttatgtaagtttctcacacacatttgagggtagttttggccatgtgttaaatgtttaca 28213904  T
Q  193 caatttatagattttgatggtactgtgttaaatgtctagtattgcaaggctgcaat 248  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28213903 gaatttatagattttgatggtactgtgttaaatgtctaatattgcaaggctgcaat 28213848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 28222465 - 28222616
Alignment:
Q  255 caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattata 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28222465 caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattata 28222564  T
Q  355 gatcaagaaatcattcttagttttgatatttcaagtcacaattgcttctgtg 406  Q
    ||||||| |||||||||||| | ||||| | |||||||||  ||||||||||    
T  28222565 gatcaaggaatcattcttagatatgataatacaagtcacagctgcttctgtg 28222616  T

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Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 226 - 406
Target Start/End: Complemental strand, 28213838 - 28213660
Alignment:
Q  226 gtctagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtat 325  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  28213838 gtctagtgttgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--t 28213741  T
Q  326 aagctccctattcaactcttacaattatagatcaagaaatcattcttagttttgatatttcaagtcacaattgcttctgtg 406  Q
    ||||||||||||||||||||||||||| |||||  | ||| |||||  | | ||||||| |||||||||| ||||||||||    
T  28213740 aagctccctattcaactcttacaattagagatcttggaataattctatgatatgatattgcaagtcacaactgcttctgtg 28213660  T

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Target: chr2; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 229 - 385
Target Start/End: Complemental strand, 32813526 - 32813370
Alignment:
Q  229 tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataag 328  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  32813526 tagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataag 32813427  T
Q  329 ctccctattcaactcttacaattatagatcaagaaatcattcttagttttgatattt 385  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||| | ||||||||    
T  32813426 ctccctattcaactcttacaattagagatcaataaatgattcttagatatgatattt 32813370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 93 - 325
Target Start/End: Complemental strand, 32799490 - 32799246
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt---gttaaatgt-t 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||   || | |  | |    
T  32799490 gttcatatatttcattctagtttagcaaatttgttctcttcctatgtaagtttctcatacacattttagggtagttttggccatgtaaagtgacagctat 32799391  T
Q  189 tacacaatttatagattttgatggtactgtgttaaa---tgt-----ctagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgc 280  Q
    || | |||||||| |||||  ||| ||||| |||||   |||     ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  32799390 tatagaatttataaatttttgtggcactgttttaaaatatgtttactctagtgttgcaaggctgcaataaatatcaacaaatcaaagtgttcttttatgc 32799291  T
Q  281 cttaataaaacttggattccaaggtattgaagtatatttttgtat 325  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  32799290 cttattaaaacttagattccaaggtattgaagtatatttttgtat 32799246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 32792723 - 32792578
Alignment:
Q  229 tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataag 328  Q
    |||| ||||||||||||||||||||| || |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  32792723 tagtgttgcaaggctgcaataaatataaacaaatcaaattgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttgtataag 32792624  T
Q  329 ctccctattcaactcttacaattatagatcaagaaatcattcttag 374  Q
    |||| |||| |||||||||||||| ||||||| |||| ||||||||    
T  32792623 ctccgtattgaactcttacaattagagatcaataaatgattcttag 32792578  T

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Target: chr2; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 234 - 371
Target Start/End: Complemental strand, 32563864 - 32563727
Alignment:
Q  234 ttgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccc 333  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  32563864 ttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttttataagctccc 32563765  T
Q  334 tattcaactcttacaattatagatcaagaaatcattct 371  Q
    |||||| |||||||||||| | ||||| |||| |||||    
T  32563764 tattcagctcttacaattagatatcaataaatgattct 32563727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 32306703 - 32306788
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt 178  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||    
T  32306703 gttcatatatttcattctagtttagcaaatttgttctcttcctatgtaagtttctcatacacattttagggtagttttggccatgt 32306788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 32785210 - 32785109
Alignment:
Q  229 tagtattgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatat-ttttgtataa 327  Q
    |||| ||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  32785210 tagtgttgcaaggctgcagtaaatatcaacaaatgaaaatgttctgttatgccttattaaaacttggattccaaggtattgaagtatatcttttgaataa 32785111  T
Q  328 gc 329  Q
    ||    
T  32785110 gc 32785109  T

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Target: chr2; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 32786439 - 32786354
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||| |||||||    
T  32786439 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacatattttagggtggttttggccatgt 32786354  T

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Target: chr2; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 32792822 - 32792737
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt 178  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  32792822 gttcatatatttcattctagtttatcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgt 32792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 32563987 - 32563903
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacacatttgatggtagttttagccatgt 178  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |||||||||| ||||||||| |||||||    
T  32563987 gttcatatatttcattctggtttagaaaatttgtttt-ttccaatgtaagtttctcatacacatttgagggtagttttggccatgt 32563903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 32813650 - 32813598
Alignment:
Q  93 gttcatatatttcattctggtttagcaaatttgttctcttcctatgtaagttt 145  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  32813650 gttcatataattcattctggtttagaaaatttgttctcttcctatgcaagttt 32813598  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 32790374 - 32790307
Alignment:
Q  339 aactcttacaattatagatcaagaaatcattcttagttttgatatttcaagtcacaattgcttctgtg 406  Q
    |||||||||||||| |||| || |||| |||||||| | ||||||| |||||||||| ||||||||||    
T  32790374 aactcttacaattagagattaataaatgattcttagatatgatattgcaagtcacaactgcttctgtg 32790307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 28148180 - 28148230
Alignment:
Q  323 tataagctccctattcaactcttacaattatagatcaagaaatcattctta 373  Q
    |||||||||||||||||||||||||||||| ||||||  |||| |||||||    
T  28148180 tataagctccctattcaactcttacaattacagatcagtaaatgattctta 28148230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 28179344 - 28179414
Alignment:
Q  288 aaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattatagatc 358  Q
    |||||||||||  |||||||  |||| ||||||  ||| |||||||||||||||||||||||||| |||||    
T  28179344 aaacttggatttgaaggtatcaaagtgtattttcttatcagctccctattcaactcttacaattacagatc 28179414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 28211836 - 28211804
Alignment:
Q  288 aaacttggattccaaggtattgaagtatatttt 320  Q
    |||||||||||||||||||||||||| ||||||    
T  28211836 aaacttggattccaaggtattgaagtgtatttt 28211804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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