View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0916_low_15 (Length: 414)
Name: NF0916_low_15
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_15 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 40 - 404
Target Start/End: Complemental strand, 1042361 - 1041997
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1042361 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
1042262 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042261 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
1042162 |
T |
|
| Q |
240 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattattcttgtgcctcatttcctttccgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1042161 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttcttgtgcctcatttcctttccgt |
1042062 |
T |
|
| Q |
340 |
ccgtgttattgagccttaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
404 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042061 |
ccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
1041997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 40 - 404
Target Start/End: Complemental strand, 41193426 - 41193062
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41193426 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
41193327 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193326 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
41193227 |
T |
|
| Q |
240 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattattcttgtgcctcatttcctttccgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
41193226 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttcttgtgcctcatttcctttccgt |
41193127 |
T |
|
| Q |
340 |
ccgtgttattgagccttaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
404 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193126 |
ccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
41193062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 40 - 404
Target Start/End: Complemental strand, 41200682 - 41200318
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41200682 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
41200583 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200582 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
41200483 |
T |
|
| Q |
240 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattattcttgtgcctcatttcctttccgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41200482 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttcttgtgcctcatttcctttccgt |
41200383 |
T |
|
| Q |
340 |
ccgtgttattgagccttaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
404 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41200382 |
ccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
41200318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 41408540 - 41408355
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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|
| T |
41408540 |
aaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcggattca |
41408441 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
225 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41408440 |
acagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 40 - 404
Target Start/End: Complemental strand, 33323952 - 33323588
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33323952 |
aaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacactggtttgactttcaaacaaaatacgcccctccgattca |
33323853 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323852 |
acagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctcgcgaacttcat |
33323753 |
T |
|
| Q |
240 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattattcttgtgcctcatttcctttccgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33323752 |
atctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattcttcttgtgcctcatttcctttccgt |
33323653 |
T |
|
| Q |
340 |
ccgtgttattgagccttaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
404 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323652 |
ccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccatttcatc |
33323588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 2443 - 2632
Alignment:
| Q |
57 |
gttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattcaacagaaaatggtcaaag |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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|
| T |
2443 |
gttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtttgactttcaaacaaaatatgccccttggattcaacagaaaatgcgcaaag |
2542 |
T |
|
| Q |
157 |
ctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaatctc-gcgaacttcatatcttt |
245 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
2543 |
ctcacagtttatcggacaggaaaatacattgcaattttgaagagcatcttattgcattattacaacaatctcggtgaacttcatatcttt |
2632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 22915 - 23100
Alignment:
| Q |
40 |
aaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccgattca |
139 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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|
| T |
22915 |
aaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcggattca |
23014 |
T |
|
| Q |
140 |
acagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
225 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23015 |
acagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 38951799 - 38951714
Alignment:
| Q |
242 |
ctttcctgatttttacaaagcgcttccaccagtttttcttattcgtttcacccttatcgaaatcctgaaattattcttgtgcctca |
327 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||| |||| | || ||| |||||||||||| ||||| ||||| ||||||| |
|
|
| T |
38951799 |
ctttcctgatgttcacaaaacgcttcaaccagtttttcctattagctttaccattatcgaaatcccaaaattcttcttttgcctca |
38951714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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