View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0916_low_16 (Length: 400)
Name: NF0916_low_16
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 40968059 - 40968320
Alignment:
| Q |
22 |
aacacttgtcttaataaatactataaacatatgaaaagaactgtgtcctgaattaaatcatttcctgttaagattcaaactaaggattattctagtacaa |
121 |
Q |
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| T |
40968059 |
aacacttgtcttaataaatactataaaaatatgaaaagaactgtgtcctgagttaaatcatttcctgttaagattcaaactaaggattattctagtacaa |
40968158 |
T |
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| Q |
122 |
aacaaatatatctatgtgcaaacctggcagtccattctgtcagtaaatccaccatgtccaggtatactgtcaccaaagtcctggattcattgtgagagat |
221 |
Q |
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| T |
40968159 |
aacaaatatatctatgtgcaaacctggcagtccattctgtcagtaaatccaccatgtccaggtatactgtcaccaaagtcctggattcattgtgagagat |
40968258 |
T |
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| Q |
222 |
taatgctatatttggaagttttaaagtgaaaggtgaaaagcatatgattgcaaactcaaccc |
283 |
Q |
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| T |
40968259 |
taatgctatatttggaagttttaaagtgaaaggtgaaaagcatatgattgcaaactcaaccc |
40968320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 52926205 - 52926083
Alignment:
| Q |
278 |
caacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgtgctcaccgctccgca |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52926205 |
caacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgtgctcaccgctccgca |
52926106 |
T |
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| Q |
378 |
atcaccagagtaaatgctgatga |
400 |
Q |
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| T |
52926105 |
atcaccagagtaaatgctgatga |
52926083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 9136737 - 9136798
Alignment:
| Q |
143 |
acctggcagtccattctgtcagtaaatccaccatgtccaggtatactgtcaccaaagtcctg |
204 |
Q |
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| T |
9136737 |
acctggcagtccattctgtcggtaagtccaccgtgtcctggaatactatcgccaaaatcctg |
9136798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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