View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0916_low_18 (Length: 390)
Name: NF0916_low_18
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 36650387 - 36650668
Alignment:
| Q |
9 |
gaataatataaatggaaaggatcttataaatactaatttggtggcttatattgcataaaaaatcaaaatgcaaacaggtatttggttccataacaaagcc |
108 |
Q |
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| T |
36650387 |
gaataatataaatggaaaggatcttataaatactaatttggtggcttatattgcataaaaaatcaaaatgcaaacaggtatttggttccataacaaagcc |
36650486 |
T |
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| Q |
109 |
tttgattgaggctgtgaacttaaagcattcaaaaccagccatttctgattccaccgataatcaagaggatctaagactgctattacttgaaagcaatagt |
208 |
Q |
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| T |
36650487 |
tttgattgaggctgtgaacttaaagcattcaaaaccagccatttctgattccaccgataatcaagaggatctaagactgctattacttgaaagcaatagt |
36650586 |
T |
|
| Q |
209 |
tccatcaaccaaagcatcaatcagtcaaatcgaagacgaagtaacctgagtttgatgatgtgttatcctactactaccgttc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36650587 |
tccatcaaccaaagcatcaatcagtcaaatcgaagacgaagtaacctgagtttgatgatgcgttatcctactactaccgttc |
36650668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 52926188 - 52926083
Alignment:
| Q |
285 |
ccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgtgctcaccgctccgcaatcaccagagtaaatgc |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52926188 |
ccgttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgtgctcaccgctccgcaatcaccagagtaaatgc |
52926089 |
T |
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| Q |
385 |
tgatga |
390 |
Q |
| |
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|||||| |
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| T |
52926088 |
tgatga |
52926083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 36655377 - 36655477
Alignment:
| Q |
77 |
tgcaaacaggtatttggttccataacaaagcctttgattgaggctgtgaacttaaagcattcaaaaccagccatttctgattccaccgataatcaagagg |
176 |
Q |
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||||||||||||||||||||||||||||| ||| | |||||||| ||| ||||||||||||||| | | | |||||||||| ||||| |||| |||| |
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| T |
36655377 |
tgcaaacaggtatttggttccataacaaaacctctaattgaggccgtgctactaaagcattcaaaacaaacaacttctgattccgccgattatcatgagg |
36655476 |
T |
|
| Q |
177 |
a |
177 |
Q |
| |
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| |
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| T |
36655477 |
a |
36655477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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