View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0916_low_24 (Length: 337)

Name: NF0916_low_24
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0916_low_24
NF0916_low_24
[»] chr1 (34 HSPs)
chr1 (99-334)||(16833785-16834025)
chr1 (99-334)||(7882294-7882536)
chr1 (99-334)||(23192371-23192612)
chr1 (99-168)||(51041053-51041122)
chr1 (101-168)||(10140577-10140644)
chr1 (99-232)||(47450769-47450903)
chr1 (99-168)||(3094548-3094617)
chr1 (99-168)||(16649178-16649247)
chr1 (101-168)||(10135809-10135876)
chr1 (99-168)||(12260475-12260544)
chr1 (100-168)||(25844235-25844304)
chr1 (99-168)||(39200305-39200374)
chr1 (99-167)||(26927263-26927331)
chr1 (99-168)||(38621189-38621258)
chr1 (99-166)||(19798544-19798611)
chr1 (99-168)||(17214009-17214078)
chr1 (99-246)||(8267401-8267548)
chr1 (99-246)||(41097525-41097672)
chr1 (99-246)||(18784119-18784267)
chr1 (100-169)||(25661446-25661515)
chr1 (99-140)||(39587903-39587944)
chr1 (102-178)||(2493423-2493499)
chr1 (289-336)||(28434383-28434431)
chr1 (287-333)||(12260291-12260338)
chr1 (102-169)||(27761442-27761508)
chr1 (272-337)||(3094386-3094452)
chr1 (272-337)||(33055337-33055403)
chr1 (99-168)||(33300788-33300858)
chr1 (102-163)||(12906574-12906635)
chr1 (106-178)||(24159426-24159498)
chr1 (138-178)||(28857700-28857740)
chr1 (102-178)||(31064373-31064449)
chr1 (138-178)||(33380566-33380606)
chr1 (102-169)||(36725134-36725201)
[»] chr5 (36 HSPs)
chr5 (102-334)||(39518710-39518947)
chr5 (102-334)||(39523349-39523586)
chr5 (99-334)||(4872223-4872452)
chr5 (99-168)||(40148380-40148449)
chr5 (99-178)||(557145-557224)
chr5 (99-178)||(561917-561996)
chr5 (99-168)||(9726297-9726366)
chr5 (99-168)||(26667757-26667826)
chr5 (99-168)||(26939354-26939423)
chr5 (99-168)||(29167515-29167584)
chr5 (99-168)||(36424122-36424191)
chr5 (99-168)||(36429194-36429263)
chr5 (99-168)||(36941831-36941900)
chr5 (101-166)||(37549696-37549761)
chr5 (101-166)||(37652494-37652559)
chr5 (99-168)||(20180700-20180769)
chr5 (99-168)||(36937077-36937146)
chr5 (100-168)||(37248345-37248414)
chr5 (101-168)||(7452237-7452304)
chr5 (99-168)||(35679431-35679503)
chr5 (99-168)||(12103510-12103579)
chr5 (99-246)||(13301057-13301202)
chr5 (99-169)||(23688577-23688647)
chr5 (99-246)||(31731918-31732065)
chr5 (99-178)||(6154976-6155057)
chr5 (99-168)||(6513457-6513527)
chr5 (102-179)||(13290852-13290930)
chr5 (99-164)||(16115774-16115840)
chr5 (99-246)||(12044701-12044849)
chr5 (272-337)||(3666209-3666275)
chr5 (272-337)||(12044869-12044935)
chr5 (272-337)||(36937242-36937308)
chr5 (272-337)||(36941996-36942062)
chr5 (272-337)||(41996958-41997024)
chr5 (272-337)||(42001727-42001793)
chr5 (100-157)||(25838197-25838254)
[»] chr2 (24 HSPs)
chr2 (102-334)||(30651229-30651466)
chr2 (99-334)||(29678068-29678309)
chr2 (100-334)||(7737407-7737645)
chr2 (99-262)||(42926186-42926349)
chr2 (99-168)||(19892015-19892084)
chr2 (99-168)||(9180271-9180340)
chr2 (99-168)||(12797409-12797478)
chr2 (99-168)||(17968505-17968574)
chr2 (99-168)||(25477839-25477908)
chr2 (99-168)||(25496867-25496936)
chr2 (101-168)||(9184964-9185031)
chr2 (100-168)||(1934538-1934606)
chr2 (99-168)||(31327234-31327304)
chr2 (99-168)||(18344907-18344976)
chr2 (99-246)||(17453149-17453296)
chr2 (99-246)||(6297459-6297606)
chr2 (141-334)||(19094080-19094281)
chr2 (99-166)||(28855593-28855660)
chr2 (120-246)||(30658559-30658683)
chr2 (99-246)||(30643504-30643652)
chr2 (99-169)||(35602383-35602455)
chr2 (100-178)||(7735063-7735141)
chr2 (99-178)||(10160287-10160368)
chr2 (99-169)||(13291076-13291146)
[»] scaffold0002 (2 HSPs)
scaffold0002 (99-334)||(4374-4615)
scaffold0002 (99-168)||(443487-443556)
[»] chr4 (48 HSPs)
chr4 (99-334)||(8029887-8030127)
chr4 (99-334)||(48276202-48276443)
chr4 (99-331)||(33462908-33463147)
chr4 (99-334)||(19906551-19906791)
chr4 (99-331)||(33468547-33468764)
chr4 (102-314)||(39216649-39216869)
chr4 (99-168)||(19540723-19540792)
chr4 (101-168)||(5270968-5271035)
chr4 (101-168)||(31728936-31729003)
chr4 (99-168)||(5927760-5927829)
chr4 (99-168)||(16421523-16421592)
chr4 (99-168)||(51698403-51698472)
chr4 (100-168)||(31269507-31269575)
chr4 (100-168)||(31273996-31274064)
chr4 (100-168)||(37259409-37259477)
chr4 (99-168)||(12823433-12823502)
chr4 (99-168)||(31766355-31766424)
chr4 (100-168)||(37264109-37264177)
chr4 (115-249)||(8536639-8536774)
chr4 (99-168)||(8694197-8694266)
chr4 (99-168)||(32081670-32081738)
chr4 (99-168)||(47244625-47244694)
chr4 (100-168)||(19107093-19107161)
chr4 (99-232)||(6943200-6943334)
chr4 (99-168)||(55252147-55252216)
chr4 (99-168)||(13059891-13059960)
chr4 (99-178)||(13059934-13060012)
chr4 (101-168)||(13065347-13065414)
chr4 (272-337)||(13521718-13521784)
chr4 (103-168)||(32221103-32221169)
chr4 (99-169)||(42316173-42316243)
chr4 (99-178)||(47575109-47575190)
chr4 (112-168)||(19102462-19102519)
chr4 (99-231)||(41817179-41817310)
chr4 (99-162)||(55150076-55150139)
chr4 (117-178)||(2820268-2820330)
chr4 (216-316)||(12878558-12878664)
chr4 (99-246)||(13521551-13521698)
chr4 (99-246)||(39319946-39320091)
chr4 (102-178)||(15020070-15020146)
chr4 (138-178)||(16595606-16595646)
chr4 (102-178)||(55081303-55081379)
chr4 (99-178)||(3997628-3997707)
chr4 (99-168)||(42758401-42758472)
chr4 (291-336)||(39319866-39319912)
chr4 (272-337)||(47574956-47575022)
chr4 (137-178)||(33722560-33722601)
chr4 (137-178)||(40684499-40684540)
[»] chr8 (29 HSPs)
chr8 (99-334)||(40125439-40125680)
chr8 (99-334)||(17026236-17026479)
chr8 (99-334)||(17556728-17556971)
chr8 (99-168)||(1910499-1910568)
chr8 (99-246)||(31449431-31449576)
chr8 (99-166)||(15951095-15951162)
chr8 (99-181)||(38181787-38181869)
chr8 (99-168)||(4237907-4237976)
chr8 (99-168)||(4242646-4242715)
chr8 (99-232)||(18875932-18876066)
chr8 (99-166)||(19167131-19167198)
chr8 (99-168)||(1807929-1807998)
chr8 (99-168)||(44925465-44925534)
chr8 (99-168)||(17020833-17020902)
chr8 (99-168)||(17551270-17551339)
chr8 (94-254)||(17953513-17953674)
chr8 (101-168)||(2966114-2966181)
chr8 (99-246)||(37772086-37772234)
chr8 (128-273)||(15875269-15875415)
chr8 (272-337)||(4238072-4238138)
chr8 (272-337)||(4242811-4242877)
chr8 (101-246)||(25367555-25367700)
chr8 (99-168)||(36684064-36684136)
chr8 (99-165)||(24672867-24672933)
chr8 (101-159)||(26779609-26779667)
chr8 (112-168)||(15875359-15875416)
chr8 (272-336)||(34818437-34818502)
chr8 (99-246)||(8330930-8331077)
chr8 (102-178)||(19954690-19954766)
[»] chr6 (27 HSPs)
chr6 (99-334)||(14509285-14509523)
chr6 (100-336)||(17913895-17914138)
chr6 (100-168)||(16835703-16835771)
chr6 (99-160)||(2699638-2699699)
chr6 (99-168)||(4156898-4156967)
chr6 (99-168)||(12689456-12689525)
chr6 (99-168)||(11570288-11570358)
chr6 (99-181)||(22610015-22610097)
chr6 (100-168)||(6407406-6407475)
chr6 (99-168)||(11559760-11559830)
chr6 (99-168)||(17964101-17964170)
chr6 (99-168)||(22694852-22694921)
chr6 (101-168)||(12405902-12405969)
chr6 (99-168)||(11534250-11534320)
chr6 (99-168)||(33687191-33687261)
chr6 (289-334)||(20748053-20748098)
chr6 (103-168)||(11428440-11428506)
chr6 (99-168)||(20747845-20747914)
chr6 (99-168)||(25313997-25314066)
chr6 (99-168)||(26201491-26201560)
chr6 (101-168)||(19994941-19995008)
chr6 (100-169)||(14575169-14575239)
chr6 (104-246)||(2759957-2760098)
chr6 (99-140)||(2077299-2077340)
chr6 (99-169)||(24588745-24588817)
chr6 (113-161)||(15991228-15991276)
chr6 (137-181)||(35130040-35130084)
[»] chr3 (38 HSPs)
chr3 (99-333)||(12965431-12965667)
chr3 (202-334)||(12971290-12971427)
chr3 (99-246)||(8888313-8888458)
chr3 (101-168)||(18472490-18472557)
chr3 (99-168)||(3034102-3034171)
chr3 (99-168)||(3673045-3673114)
chr3 (99-168)||(3693077-3693146)
chr3 (99-168)||(8070137-8070206)
chr3 (99-169)||(8883628-8883698)
chr3 (99-168)||(20520438-20520507)
chr3 (99-168)||(39775270-39775339)
chr3 (100-168)||(23661009-23661077)
chr3 (100-168)||(24037916-24037984)
chr3 (101-168)||(14438244-14438311)
chr3 (101-168)||(18467708-18467775)
chr3 (99-181)||(46964480-46964563)
chr3 (100-168)||(757909-757978)
chr3 (100-168)||(23665668-23665736)
chr3 (100-168)||(7570761-7570830)
chr3 (99-168)||(27709413-27709482)
chr3 (99-168)||(29350723-29350792)
chr3 (99-168)||(3419470-3419540)
chr3 (99-168)||(55326259-55326327)
chr3 (99-246)||(10585756-10585903)
chr3 (99-165)||(3656773-3656840)
chr3 (99-148)||(55431784-55431833)
chr3 (99-178)||(53358546-53358625)
chr3 (99-169)||(35456505-35456575)
chr3 (102-178)||(4662582-4662658)
chr3 (99-246)||(45904112-45904258)
chr3 (272-337)||(3033940-3034006)
chr3 (272-337)||(3672883-3672949)
chr3 (272-337)||(3692915-3692981)
chr3 (272-337)||(8069975-8070041)
chr3 (99-169)||(32747692-32747762)
chr3 (101-167)||(49019864-49019930)
chr3 (99-144)||(18699344-18699389)
chr3 (138-178)||(16983379-16983419)
[»] chr7 (26 HSPs)
chr7 (99-334)||(3880296-3880531)
chr7 (99-329)||(16372711-16372949)
chr7 (99-168)||(26341691-26341760)
chr7 (102-168)||(42626135-42626201)
chr7 (99-168)||(2595305-2595375)
chr7 (99-168)||(12799868-12799938)
chr7 (101-168)||(4930704-4930772)
chr7 (99-178)||(4579971-4580050)
chr7 (99-168)||(8268777-8268847)
chr7 (99-164)||(44422681-44422746)
chr7 (100-168)||(19640760-19640828)
chr7 (99-246)||(27256617-27256764)
chr7 (99-163)||(30258589-30258653)
chr7 (272-337)||(9650693-9650759)
chr7 (289-334)||(26286895-26286940)
chr7 (112-168)||(26286700-26286756)
chr7 (99-246)||(40864931-40865078)
chr7 (99-246)||(23866453-23866601)
chr7 (99-246)||(9650526-9650673)
chr7 (272-337)||(23866367-23866433)
chr7 (272-336)||(10498381-10498446)
chr7 (272-336)||(10503410-10503475)
chr7 (105-168)||(10387903-10387966)
chr7 (102-178)||(6898003-6898078)
chr7 (99-140)||(16580716-16580757)
chr7 (99-147)||(13313828-13313876)
[»] scaffold0182 (2 HSPs)
scaffold0182 (99-178)||(9447-9526)
scaffold0182 (272-337)||(9612-9678)
[»] scaffold0352 (1 HSPs)
scaffold0352 (99-168)||(7589-7658)
[»] scaffold0054 (2 HSPs)
scaffold0054 (99-168)||(29657-29726)
scaffold0054 (107-168)||(25938-25999)
[»] scaffold0008 (1 HSPs)
scaffold0008 (99-170)||(256270-256341)
[»] scaffold0628 (1 HSPs)
scaffold0628 (99-192)||(6823-6916)
[»] scaffold0240 (2 HSPs)
scaffold0240 (99-161)||(4463-4525)
scaffold0240 (289-334)||(4274-4319)
[»] scaffold0060 (2 HSPs)
scaffold0060 (99-169)||(47539-47609)
scaffold0060 (99-169)||(52483-52553)
[»] scaffold0045 (1 HSPs)
scaffold0045 (99-246)||(83434-83583)
[»] scaffold0061 (1 HSPs)
scaffold0061 (99-165)||(49550-49616)
[»] scaffold0017 (1 HSPs)
scaffold0017 (99-165)||(149018-149084)
[»] scaffold0011 (1 HSPs)
scaffold0011 (99-254)||(145973-146130)
[»] scaffold0226 (1 HSPs)
scaffold0226 (102-178)||(5864-5940)
[»] scaffold0009 (2 HSPs)
scaffold0009 (100-146)||(148807-148853)
scaffold0009 (100-146)||(163987-164033)
[»] scaffold0020 (1 HSPs)
scaffold0020 (99-246)||(807-954)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 16834025 - 16833785
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |  ||||| |||||||    
T  16834025 attaagagtgttcttaagaccatagtccctttccgatttaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtcc 16833926  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttga 293  Q
    || |||||||||  ||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||     ||||||||||||||| ||||||    
T  16833925 tttggaataaataataatttaagatcatagttcctttttcggtataatgtcccttcaaaattatgaatgatcttgaaatatattcttcttcgattcttga 16833826  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
     ||||||| ||||||||||||||||||||||||||||||||    
T  16833825 tgaagttagacgttagaatggtgtaaaaccatatttgagtg 16833785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 7882536 - 7882294
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||  ||||| ||||||    
T  7882536 attaagagtgttcttaagaccatagtccctttttcggtataatgtcccttcagaattaagaatggtcttaagttcagagtccctccgatatttttatgtc 7882437  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttc-aaaattattaatgatct-----tatattcttcttcgactctt 291  Q
    ||||||||| |||  || |||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||     ||||||||||||||| ||||    
T  7882436 cttcggaatgaataatactttaagatcatagt-cccttttcggtataatgtcccttcaaaaattatgaatgatcttaaaatatattcttcttcgattctt 7882338  T
Q  292 gaagaagttaaacgttagaatggtgt-aaaaccatatttgagtg 334  Q
    |||||||||| ||||||||||||||| |||||||||||||||||    
T  7882337 gaagaagttagacgttagaatggtgtaaaaaccatatttgagtg 7882294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 23192371 - 23192612
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||  ||| || |  ||||| ||||||    
T  23192371 attaagagtgttcttaagaccatagtcccttttcggtttaaatgtccattcggaattaagaatggtcttaagttcacggtcccttcgatatttttatgtc 23192470  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    |||| ||||||||  ||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||     ||||||||| ||||| |||||    
T  23192471 cttccgaataaataataatttaagatcatagtaccattttcggtataatgtcccttcaaaattatgaatgatcttaaaatatattcttattcgattcttg 23192570  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  23192571 aagaagttagacgttagaatggtgcaaaaccatatttgagtg 23192612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 51041053 - 51041122
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51041053 attaagagtattcttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 51041122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 10140644 - 10140577
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10140644 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 10140577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 47450769 - 47450903
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgt-c 197  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||   |||||||||| |  ||  ||||||| |    
T  47450769 attaagagtgtttttaagaccatagtcccttttcggtttaatgccccttcaaaattaagaatggtcttaaaaacatagtctcttcgata-atatatgtcc 47450867  T
Q  198 cttcggaataaatggta-atttaagatcatagtccc 232  Q
    ||||||||||||  |||  |||||||||||||||||    
T  47450868 cttcggaataaagagtacttttaagatcatagtccc 47450903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3094617 - 3094548
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3094617 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 3094548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 16649178 - 16649247
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  16649178 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 16649247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 10135876 - 10135809
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10135876 taagagtattcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 10135809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 12260544 - 12260475
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  12260544 attaagagtgtttttaagaccatagtccattttcggtataatgtcccttcagaattaaggatggtcttaa 12260475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 25844304 - 25844235
Alignment:
Q  100 ttaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  25844304 ttaagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaa 25844235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 39200305 - 39200374
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  39200305 attaagagtgttcttaataccatagtccctttttggtttaatgtcccttcggaattaagaatggtcttaa 39200374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 26927263 - 26927331
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctta 167  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  26927263 attaagagtgttcttaagaccatagtcccttttcggtttaatatccctttggaattaagaatggtctta 26927331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 38621258 - 38621189
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  38621258 attaagagtgttcttaagatcatagtcccttttcgttttaatgtcccttcagaattaataatgctcttaa 38621189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 19798544 - 19798611
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||    
T  19798544 attaagagtgttcttaagaccatagtccctttttgatttaatgtcccttcgaaattaagaatggtctt 19798611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 17214009 - 17214078
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||    
T  17214009 attaagagtgttcttaagaccatagttccttttcggtttattgtcctttcggaactaagaatggtcttaa 17214078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 8267401 - 8267548
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    ||||||| |||| ||||||||||||||| | ||||||||| ||||| |||  || ||||||||||||||||  ||||||| | || |||||| || | |     
T  8267401 attaagaatgttcttaagaccatagtccttattcggtttattgtcctttcgaaaataagaatggtcttaagagcatagtcccttcaattattcatgtct- 8267499  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| ||| |||||||||    
T  8267500 ctttagaataaatattattttaagatcatggtcccttttacggtataat 8267548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 41097525 - 41097672
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||| ||| |  |||||||| | ||| ||  ||| ||||||||||||||||  ||||||| | || ||||||||| | |     
T  41097525 attaagagtgttcttaagaccataatccatcgtcggtttattatccttttggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 41097623  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  41097624 ctttagaataaataatattttaagatcatggtccctttttcggtataat 41097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 18784119 - 18784267
Alignment:
Q  99 attaagagtgttgttaagacc--atagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatg 195  Q
    |||||||||||| ||||||||  ||||||  |||||||| || ||| | ||| |||| |||||||||||||||  ||||||| | || ||||||||| |     
T  18784119 attaagagtgttcttaagaccatatagtcttttttcggtatattgttcattcggaatcaagaatggtcttaagagcatagtcccttcaattatttatgtc 18784218  T
Q  196 tccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    | |||  ||||||||  |||||||||||||||||  |||||||||||||||    
T  18784219 t-ctttagaataaataataatttaagatcatagt-accttttcggtataat 18784267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 25661446 - 25661515
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    ||||||||||| ||||| ||||||||| |||    | |||||||||||| ||||||||||||||||||||    
T  25661446 ttaagagtgttattaaggccatagtccatttggtttataatgtcccttcggaattaagaatggtcttaag 25661515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 39587903 - 39587944
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaat 140  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  39587903 attaagagtgttcttaagaccatagtccctttccggtttaat 39587944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 2493423 - 2493499
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||| |||| ||||||||||||||||||   |   |||||||||||| ||||||||||||||||||||  |||||||    
T  2493423 aagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcatagtc 2493499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 28434383 - 28434431
Alignment:
Q  289 cttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggt 336  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  28434383 cttgaagaagttaaaggttagaatggtggtaacaccatatttgagtggt 28434431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 12260338 - 12260291
Alignment:
Q  287 ctcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagt 333  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||    
T  12260338 ctcttgaagaagttgaaggttagaatggtggtaaaaccatatttgagt 12260291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 27761442 - 27761508
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggttt--aatgtcccttcagaattaagaatggtcttaag 169  Q
    ||||||||| ||||| |||||||||||||  |||||  ||||||||||||||| ||||||||||||||||    
T  27761442 aagagtgttcttaaggccatagtcccttt--ggtttaaaatgtcccttcagaa-taagaatggtcttaag 27761508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 3094452 - 3094386
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  3094452 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 3094386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 33055403 - 33055337
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | || ||||||||| ||| ||||||||||| |||  |||||||||||||||||    
T  33055403 tatattcttcttctattcatgaagaagtaaaatgttagaatggtcgtagcaccatatttgagtggtt 33055337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 33300788 - 33300858
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttc-ggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||| ||||||||| ||||||  |||||||||||||||| ||| |||||| ||||||||    
T  33300788 attaaaagtgttcttaggaccatagttccttttttggtttaatgtcccttcggaactaagaacggtcttaa 33300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 12906635 - 12906574
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggttta--atgtcccttcagaattaagaatggt 163  Q
    ||||||||| ||||| ||||||||||||  |||||||  |||||||||| ||||||||||||||    
T  12906635 aagagtgttcttaaggccatagtccctt--cggtttataatgtcccttcggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 24159426 - 24159498
Alignment:
Q  106 gtgttgttaagaccatagtcccttttcggtttaa--tgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||| ||||| ||||||||||||  ||||||||  ||||||||| |||||||||| |||||||||  |||||||    
T  24159426 gtgttcttaaggccatagtccctt--cggtttaaaatgtcccttcggaattaagaacggtcttaagaacatagtc 24159498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 28857700 - 28857740
Alignment:
Q  138 aatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||| ||||||||||||||||||||||||  |||||||    
T  28857700 aatgtccattcagaattaagaatggtcttaagaacatagtc 28857740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 31064449 - 31064373
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa--tgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| |||||| ||||||| ||||  |||||||  ||||||||| ||||| ||||||||||||||  |||||||    
T  31064449 aagagtgttcttaagatcatagtctcttt--ggtttaaaatgtcccttcggaattgagaatggtcttaagaacatagtc 31064373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 33380566 - 33380606
Alignment:
Q  138 aatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  33380566 aatgtcccttcggaattaagaatggtcttaagaacatagtc 33380606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 36725201 - 36725134
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtt-taatgtcccttcagaattaagaatggtcttaag 169  Q
    ||||||||| ||||| ||||||||| |||| | || ||||||||||||  |||||||||||||||||||    
T  36725201 aagagtgttcttaaggccatagtcc-ttttggtttataatgtcccttcgaaattaagaatggtcttaag 36725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 334
Target Start/End: Complemental strand, 39518947 - 39518710
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcctt 200  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||||| |||||||||    
T  39518947 aagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtcctt 39518848  T
Q  201 cggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttgaag 295  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||     ||||||||||||||| ||||||||    
T  39518847 cggaataaataataatttaagatcatagt-cccttttcggtataatgtcccttcaaaaatatgaatgatcttaaaatatattcttcttcgattcttgaag 39518749  T
Q  296 aagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39518748 aagttagacgttagaatggtgtaaaaccatatttgagtg 39518710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 334
Target Start/End: Complemental strand, 39523586 - 39523349
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcctt 200  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||||| |||||||||    
T  39523586 aagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtcctt 39523487  T
Q  201 cggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttgaag 295  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||     ||||||||||||||| ||||||||    
T  39523486 cggaataaataataatttaagatcatagt-cccttttcggtataatgtcccttcaaaaatatgaatgatcttaaaatatattcttcttcgattcttgaag 39523388  T
Q  296 aagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39523387 aagttagacgttagaatggtgtaaaaccatatttgagtg 39523349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 4872452 - 4872223
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||| || |  ||||| |||||||    
T  4872452 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcttttcagaattcagaatgatcttaagttcatagtcccttcgatatttttatgtcc 4872353  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatcttatattcttcttcgactcttgaagaag 298  Q
    |||| |||||||  ||| ||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||    ||||||||||| |||||||||||    
T  4872352 ttcgcaataaataataa-ttaagatcatact-cccttttcggtataatgtctcttcaaaattatgaatgatct----ttcttcttcgattcttgaagaag 4872259  T
Q  299 ttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||| ||||||||||||||||||| ||||||||||||    
T  4872258 ttagacgttagaatggtgtaaaatcatatttgagtg 4872223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 40148449 - 40148380
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40148449 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 40148380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 557224 - 557145
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  557224 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagaacatagtc 557145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 561996 - 561917
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  561996 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagaacatagtc 561917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 9726297 - 9726366
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9726297 attaagagtgttcttaagaccgtagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 9726366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 26667826 - 26667757
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26667826 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 26667757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 26939423 - 26939354
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26939423 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 26939354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 29167515 - 29167584
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29167515 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 29167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 36424191 - 36424122
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36424191 attaagactgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 36424122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 36429263 - 36429194
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  36429263 attaagagtgttcttaagaccatagtcccttttcgttttaatgtcccttcggaattaagaatggtcttaa 36429194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 36941831 - 36941900
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36941831 attaagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 36941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 37549696 - 37549761
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37549696 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtctt 37549761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 37652494 - 37652559
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37652494 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtctt 37652559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 20180700 - 20180769
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  20180700 attaagagtgttcttaagaccatagtccctgttcggtttaatgtcccttcaaaattaagaatgatcttaa 20180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 36937077 - 36937146
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36937077 attaagagtaatcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 36937146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 37248345 - 37248414
Alignment:
Q  100 ttaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  37248345 ttaagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcagaattaagaatgatcttaa 37248414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 7452304 - 7452237
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  7452304 taagagttttcttaagaccattgtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 7452237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 35679431 - 35679503
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcag---aattaagaatggtcttaa 168  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  35679431 attaagagtgttctaaagaccatagtcccttttcggtttaatgtcccttcagaataattaagaatggtcttaa 35679503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 12103579 - 12103510
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||    
T  12103579 attaagagtgtacttaagaccatagttccttttcggtttaatatcccttcagaattacgaatgatcttaa 12103510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 13301057 - 13301202
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||| | |       
T  13301057 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttgtct--- 13301153  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  13301154 ctttagaataaataatattttaagatcatggtccctttttcggtataat 13301202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 23688647 - 23688577
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||| ||| ||||||||||||  |||||||||| |||||||| | | ||||||||||||||||||||    
T  23688647 attaagagagttcttaagaccatagaaccttttcggtataatgtccgtccggaattaagaatggtcttaag 23688577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 31732065 - 31731918
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |    |||||| | ||| ||||||| ||||||||||||||||  ||||| | | || ||||||||| | |     
T  31732065 attaagagtgttcttaagaccatagtccatcgctggtttattatcctttcagaaataagaatggtcttaagagcatagccccttcaattatttatgtct- 31731967  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  31731966 ctttagaataaataatattttaagatcatggtccctttttcggtataat 31731918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 6154976 - 6155057
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| |||||||||||  ||||||| |||||||| ||  |||||||||| || ||||||||||||  |||||||    
T  6154976 attaagagtgttcttaagaccatatagtcccttgtcggtttattgatccttcagaatcaataatggtcttaagagcatagtc 6155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 6513457 - 6513527
Alignment:
Q  99 attaagagtgttgttaagaccatagtccct-tttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||| | | ||| ||||||||||||||||||||  ||||||||||| ||||||    
T  6513457 attaagagtgttattaagaccacatttcctatttcggtttaatgtcccttcgaaattaagaatgatcttaa 6513527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 13290852 - 13290930
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttc-ggtttaatgtcccttcagaattaagaatggtcttaagttcatagtct 179  Q
    ||||||||| ||||||| || |||||||||  ||| |||||||| ||||||||||| ||||||||||||  ||||||||    
T  13290852 aagagtgtttttaagacaattgtcccttttgaggtataatgtcctttcagaattaaaaatggtcttaagagcatagtct 13290930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 16115774 - 16115840
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtt-taatgtcccttcagaattaagaatggtc 164  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||   | ||||||||||||    
T  16115774 attaagagtgttcttaagaccataatcccttttcggttataatgtccctttgaagttaagaatggtc 16115840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 12044701 - 12044849
Alignment:
Q  99 attaagagtgttgttaagacc--atagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatg 195  Q
    |||||||||||| ||||||||  |||||||||| ||| | || ||||||||| |||| |||||||||| ||||  ||||||| | || ||||||  ||||    
T  12044701 attaagagtgttcttaagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatggtcataagagcatagtcccttcaattatt--tatg 12044798  T
Q  196 tcc-ttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    ||| ||  |||||||   || |||||||||||||| ||||||||||||||||    
T  12044799 tccttttagaataaagaatattttaagatcatagt-cccttttcggtataat 12044849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 3666275 - 3666209
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatgg-tgtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | ||||| |||||||| | |||||||||| ||||  |||||||||||||||||    
T  3666275 tatattcttcttccattcttggagaagttagatgttagaatggttgtagcaccatatttgagtggtt 3666209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 12044869 - 12044935
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | || || |||||||| | ||||||||||| |||| |||||||||||||||||    
T  12044869 tatattcttcttcaattcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 12044935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 36937242 - 36937308
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  36937242 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 36937308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 36941996 - 36942062
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  36941996 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 36942062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 41997024 - 41996958
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  41997024 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 41996958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 42001793 - 42001727
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  42001793 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 42001727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 25838197 - 25838254
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaag 157  Q
    ||||||||||| || |||||||||||| |||| ||| || ||||||||| ||||||||    
T  25838197 ttaagagtgtttttgagaccatagtcctttttaggtatagtgtcccttctgaattaag 25838254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 334
Target Start/End: Complemental strand, 30651466 - 30651229
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcctt 200  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||||| |||||||||    
T  30651466 aagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtcctt 30651367  T
Q  201 cggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttgaag 295  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||     ||||||||||||||| ||||||||    
T  30651366 cggaataaataataatttaagatcatagt-cccttttcggtataatgtcccttcaaaaatatgaatgatcttaaaatatattcttcttcgattcttgaag 30651268  T
Q  296 aagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30651267 aagttagacgttagaatggtgtaaaaccatatttgagtg 30651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 29678309 - 29678068
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||  || |  ||||| ||||||    
T  29678309 attaagagtgttcttaagaccatagtccctattcggtttaaatgttccttcggaattaagaatggtcttaagttcatagttccttcgatatttttatgtc 29678210  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |     |||||| ||||| || |||||    
T  29678209 cttcggaataaataataatttaagatcatagtccctttttcggtataatgtcccttcaaaattatgaatgattttaaaatatattattcttggattcttg 29678110  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    || |||||| | ||||||||||||||||||||||||||||||    
T  29678109 aaaaagttagatgttagaatggtgtaaaaccatatttgagtg 29678068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 100 - 334
Target Start/End: Original strand, 7737407 - 7737645
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcct 199  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  7737407 ttaagagcgttcttaagaccatagtccctttacggtttaatgtccctttggaattaagaatggtcttaagttcatagtctcttcgatatttttatgtcct 7737506  T
Q  200 tcggaataaatggtaatttaagatcatagtc-cccttttcggtataatgtcgcttcaaaattattaatgatc-----ttatattcttcttcgactcttga 293  Q
    |||||||||||  | |||||||||||  ||| ||||||||||||||||||| |||||||||| | |||||||     |||||||||||||| | ||||||    
T  7737507 tcggaataaataattatttaagatcacggtctcccttttcggtataatgtcccttcaaaattttgaatgatcttaaattatattcttcttcaattcttga 7737606  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    |||||||| ||| ||||  ||||||||||||||||||||||    
T  7737607 agaagttagacgctaga--ggtgtaaaaccatatttgagtg 7737645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 42926186 - 42926349
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |  ||||| |||||||    
T  42926186 attaagagtgttcttaataccatagttccttttcggtttaatgtcccttcagaattaagaatggtattaagttcatagtcccttcgatatttttatgtcc 42926285  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattat 262  Q
    || |||||||||  |||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  42926286 tttggaataaataataatttaagatcatagtccttttttcggtataatgtcccttcaaaattat 42926349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 19892015 - 19892084
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19892015 attaagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 19892084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 9180271 - 9180340
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  9180271 attaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 9180340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 12797478 - 12797409
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12797478 attaagagtgttcttaataccatagtcccttttcggtttaatgtcccttcagaattaagaatgctcttaa 12797409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 17968505 - 17968574
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17968505 attaaaagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 17968574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 25477839 - 25477908
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25477839 attaaaagtgtttttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 25477908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 25496867 - 25496936
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  25496867 attaagagtgttcttaagaccttagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 25496936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 9184964 - 9185031
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  9184964 taagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 9185031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 1934538 - 1934606
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  1934538 ttaagagtgttcttaagaccatagtcgcttttcggtttcatgtcccttcggaattaagaatggtcttaa 1934606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31327304 - 31327234
Alignment:
Q  99 attaagagtgttgttaagaccatagtccct-tttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  31327304 attaagagtgttcttaagaccatagtccctgtttcggttcaatgtcccttcggaattaagaatggtcttaa 31327234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 18344976 - 18344907
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||    
T  18344976 attaagagtgttcttaagaccatagtccctttttggtttaatgtcctttcggaatgaagaatggtcttaa 18344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 17453149 - 17453296
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||| | ||||||||| ||||| ||||| || || ||| ||||| |||||||||||||||||||   ||||||| | || |||||||||| ||     
T  17453149 attaagagtgctcttaagaccaaagtcctttttcagtatattgttccttcggaattaagaatggtcttaatagcatagtcccttcaattatttataagt- 17453247  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||| ||||||||  || ||||| ||||||||||| |||||||||||||    
T  17453248 cttcagaataaataatattttaatatcatagtccctttttcggtataat 17453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 6297459 - 6297606
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | |     
T  6297459 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 6297557  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| ||||| |||||||    
T  6297558 ctttagaataaataatattttaagatcatggtccctttttcagtataat 6297606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 334
Target Start/End: Original strand, 19094080 - 19094281
Alignment:
Q  141 gtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc-ttcggaataaatggtaatttaagatcatagtccccttttcg 239  Q
    |||||||| ||||||||||||||||||||  |||| ||  | || ||||| ||||||| ||| ||||||||  || |||||||||||| | || ||||||    
T  19094080 gtcccttcggaattaagaatggtcttaagagcatactcctttcaatatttttatgtcctttcagaataaataatattttaagatcataat-ccattttcg 19094178  T
Q  240 gtataatgtcgcttc-aaaattattaatgatct------tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttga 331  Q
    |||||||| | |||| |||||||  ||||||||      || |||||||||||| ||||  |||||||| | ||||||||||| |||  |||||||||||    
T  19094179 gtataatgccccttcgaaaattaagaatgatcttacaaataaattcttcttcgattcttcgagaagttagatgttagaatggtggtagcaccatatttga 19094278  T
Q  332 gtg 334  Q
    |||    
T  19094279 gtg 19094281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 28855660 - 28855593
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||| |||| || |||||||||||||    
T  28855660 attaagagtgttcttaagaccatagtccctattcagtttattgtcctttcaaaaataagaatggtctt 28855593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 30658683 - 30658559
Alignment:
Q  120 atagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtccttcg-gaataaatggtaattt 218  Q
    |||||||||| ||| | || ||||||||| |||| |||||||||||||||  |||||||  || |||||||||  ||||||   ||||||||  || |||    
T  30658683 atagtcccttgtcgatatattgtcccttcggaatcaagaatggtcttaagagcatagtcattcaattatttat--gtccttttagaataaataatatttt 30658586  T
Q  219 aagatcatagtccccttttcggtataat 246  Q
    ||||||||||| ||||||||||||||||    
T  30658585 aagatcatagt-cccttttcggtataat 30658559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 30643652 - 30643504
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatg 195  Q
    |||||||||||| |||||||||||  ||||||| ||| | || | ||||||| |||| |||||||||||||||  ||||||| | || ||||||  ||||    
T  30643652 attaagagtgttcttaagaccatatagtcccttgtcgatatattatcccttcggaatcaagaatggtcttaagagcatagtcccttcaattatt--tatg 30643555  T
Q  196 tcc-ttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    ||| ||  |||||||   || |||||||||||||| ||||||||||||||||    
T  30643554 tccttttagaataaagaatattttaagatcatagt-cccttttcggtataat 30643504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 35602455 - 35602383
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| |||||||||||  ||||||| ||| | || ||||||||| |||| |||||||||||||||    
T  35602455 attaagagtgttcttaagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatggtcttaag 35602383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 7735141 - 7735063
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||||| |||||||||| |||| |||| |||  ||||| | || | |||||||||||||||||||  |||||||    
T  7735141 ttaagagtgttcttaagaccattgtcctttttaggtaaaatgttcatttataattaagaatggtcttaagagcatagtc 7735063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 10160287 - 10160368
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| |||||||||||  |||| || ||| | || ||||||||| |||| |||||||||||||||  |||||||    
T  10160287 attaagagtgttcttaagaccatatagtccattgtcgatatattgtcccttcggaatcaagaatggtcttaagagcatagtc 10160368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 13291076 - 13291146
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| |||||| ||||| ||||| | | | |||||||||||| ||||| | ||||||||||||    
T  13291076 attaagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaag 13291146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 4615 - 4374
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||||| ||||||    
T  4615 attaagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtc 4516  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| |||| | |||||||| ||| ||||||||     ||||||||||||||| |||||    
T  4515 cttcggaataaataataatttaagatcatagtccctttttcggtacaatgccccttcaaaaatatgaatgatcttaaaatatattcttcttcgattcttg 4416  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  4415 aagaagttagacgttagaatggtgtaaaaccatatttgagtg 4374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 443487 - 443556
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  443487 attaatagtgttcttaagaccatagtcccttttcagtttaatgttccttcggaattaagaatggtcttaa 443556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 8029887 - 8030127
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||  | |  ||||| |||||||    
T  8029887 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatgatattaagttcatagtccattcgatatttttatgtcc 8029986  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatc-----ttatattcttcttcgactcttga 293  Q
    ||||||||||||  |||||||||||||| ||| | |||||||||||||||| |||||||||||| |||||||      ||||||||||||||| ||||||    
T  8029987 ttcggaataaataataatttaagatcattgtctctttttcggtataatgtcccttcaaaattatgaatgatcctaaaatatattcttcttcgattcttga 8030086  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  8030087 agaagttagacgttagaatggtgtaaaaccatatttgagtg 8030127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 48276202 - 48276443
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggttta-atgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||  ||||||||||||||||||| ||||||||| || |  ||||| ||||||    
T  48276202 attaagagtgttcttaagactatagtcccttttcggtttagatgtccctttggaattaagaatggtcttaaattcatagtcccttcgatatttttatgtc 48276301  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    |||||||||||||  |||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||     ||||||||||||||| |||||    
T  48276302 cttcggaataaataataatttaagatcatagtccctttttcggtgtaatgtcccttcaaaattatgaatgatcttaaaatatattcttcttcgattcttg 48276401  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  48276402 aagaagttagatgttagaatggtgtaaaaccatatttgagtg 48276443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 33462908 - 33463147
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |  ||||| |||||||    
T  33462908 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatagtcttaagttcataatcccttcgatatttttatgtcc 33463007  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatctta--------tattcttcttcgactct 290  Q
    |||| |||||||  ||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||        |||||||||| || |||    
T  33463008 ttcgaaataaataataatttaagatcatagt-cccttttcagtataatgtcccttcaaaattatgaatgatcttaaaatatagtattcttctttgattct 33463106  T
Q  291 tgaagaagttaaacgttagaatggtgtaaaaccatatttga 331  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  33463107 tgaagaagttggacgtttgaatggtgtaaaaccatatttga 33463147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 19906791 - 19906551
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||| ||||| ||||||||||||  ||||||||||||||| || |  ||||| || ||||    
T  19906791 attaatagtgttcttaagatcatagtccctttttggtttaatgttccttcggaattaagaatgaccttaagttcatagtcccttcgatatttttaagtcc 19906692  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttga 293  Q
    || | |||||||  || ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||     |||||| |||||||| ||||||    
T  19906691 tttgaaataaataatattttaagatcatagtccctttttcggtataatgtcccttcaaaattatgaatgatcttaaaatatatttttcttcgattcttga 19906592  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  19906591 agaagttaaactttaaaatggtgtaaaaccatatttgagtg 19906551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 33468547 - 33468764
Alignment:
Q  99 attaagagtgttgttaa-gaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |  ||||| ||||||    
T  33468547 attaagagtgttcttaaagaccatagtcccttttcggtttaatgtccctttagaattaagaatggtcttaagttcataatcccttcgatatttttatgtc 33468646  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatctta----tattcttcttcgactcttga 293  Q
                      ||||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||||    ||||||||||||| ||||||    
T  33468647 ------------------tttaagatcatagtccc-ttttcggtataatgtct-ttcaaaattatgaatgatcttaaatatattcttcttcgattcttga 33468726  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttga 331  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33468727 agaagttggacgttagaatggtgtaaaaccatatttga 33468764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 314
Target Start/End: Original strand, 39216649 - 39216869
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgt-cctt 200  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||  ||||||||| |||||| ||  ||||||| || || ||||| ||||| ||||    
T  39216649 aagagtgttcttaagaccatagtccctattcggtataatgtcccttcgaaattaagaaaggtcttgagagcatagtcccttcaatatttttatgtccctt 39216748  T
Q  201 cggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttc--aaaattattaatgatct-----tatattcttcttcgactcttga 293  Q
     |||||||||  || ||||| ||||||||||  ||||||||||||| ||  |||  |||||||| ||||||||     ||||||||||||||| |||||     
T  39216749 tggaataaataatattttaaaatcatagtccatttttcggtataatatcctttcaaaaaattatgaatgatcttaaaatatattcttcttcgattcttgg 39216848  T
Q  294 agaagttaaacgttagaatgg 314  Q
    |||||||| |  |||||||||    
T  39216849 agaagttagatattagaatgg 39216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 19540723 - 19540792
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19540723 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 19540792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 5270968 - 5271035
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5270968 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 5271035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 31728936 - 31729003
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31728936 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttctgaattaagaatggtcttaa 31729003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 5927760 - 5927829
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5927760 attaaaagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 5927829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 16421592 - 16421523
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  16421592 attaagagtgttcttaagaccatagtcccttctcggtttaatgtcccttcggaattaagaatggtcttaa 16421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 51698472 - 51698403
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51698472 attaagagtgttcttaagacaatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 51698403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 31269575 - 31269507
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  31269575 ttaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 31269507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 31274064 - 31273996
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  31274064 ttaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 31273996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 37259409 - 37259477
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  37259409 ttaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 37259477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 12823433 - 12823502
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  12823433 attaagagtgttcttaagaccataatcccttttcagtttaatgtcccttcagaattaaaaatggtcttaa 12823502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31766424 - 31766355
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  31766424 attaagagtattcttaagaccatagtcccttttcagtttaatgtcccttcggaattaagaatggtcttaa 31766355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 37264109 - 37264177
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  37264109 ttaagagtgttcttaagaccatagtcgcttttcagtttaatgtcccttcggaattaagaatggtcttaa 37264177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 8536774 - 8536639
Alignment:
Q  115 agaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc-ttcggaataaatggt 213  Q
    |||||||||| |||||| ||| |||||||| |||||||||||||||||| |||||  |||| ||||| |  ||||| ||||||| ||  ||||||||  |    
T  8536774 agaccatagtacctttttggtataatgtccattcagaattaagaatggttttaagagcataatctcttcgatatttttatgtcctttaagaataaataat 8536675  T
Q  214 aatttaagatcatagtccccttttcggtataatgtc 249  Q
    | ||||||||||||||||| |||||||||| |||||    
T  8536674 attttaagatcatagtcccattttcggtatgatgtc 8536639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 8694266 - 8694197
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||||  |||||||||||||||||||    
T  8694266 attaagagtgttcttaagaccatagtccctttttgatttaatgtccctttggaattaagaatggtcttaa 8694197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 32081670 - 32081738
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  32081670 attaagagtgttcttaa-accatagtcccttttcggtttaatgtccctttggaattaagaatggtcttaa 32081738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 47244694 - 47244625
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  47244694 attaagagtgttcttaagactatagttccttttcggtttaatgtcccttcggaattaagaatgatcttaa 47244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 19107161 - 19107093
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  19107161 ttaagagtattcttaagaccatagttccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 19107093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 6943334 - 6943200
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| |||||||| |||||| | |||||| ||||||||||||||||||||||| ||||||||    ||||||||| |  ||  |||||||||    
T  6943334 attaagagtgttcttaagaccttagtccatattcggtataatgtcccttcagaattaagaaaggtcttaaaaaaatagtctcttcgata-atatatgtcc 6943236  T
Q  199 -ttcggaataaatggta-atttaagatcatagtccc 232  Q
     |||||||||||| |||  |||||||||||||||||    
T  6943235 attcggaataaatagtatttttaagatcatagtccc 6943200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 55252216 - 55252147
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||||||  ||||| ||||||||||||    
T  55252216 attaagagtgttcttaagaccatagtccattctcggtttaatgtcccttcgaaattaggaatggtcttaa 55252147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 13059960 - 13059891
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||||||||||||||||||||||||   |||||  |||||||||||||||||||    
T  13059960 attaaaagtgttcttaagaccatagtcccttttcggtttaacaccccttgggaattaagaatggtcttaa 13059891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 13060012 - 13059934
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||| | |||||||||||||||||||||||||| | |||||||||||||||| | || |||||||  |||||||    
T  13060012 attaagagtgatcttaagaccatagtcccttttcggttt-acgtcccttcagaattaaaagtgttcttaagaccatagtc 13059934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 13065347 - 13065414
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||| |||||||| |||||  |||||||||||| |||||||||| ||||||||    
T  13065347 taagagtgttcttaagaccttagtccctattcggcataatgtcccttcggaattaagaaaggtcttaa 13065414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 13521718 - 13521784
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | |||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  13521718 tatattcttcttcaattcttgaagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 13521784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 32221103 - 32221169
Alignment:
Q  103 agagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||| |||||||||||||| ||||| ||||||||| ||| ||| |||||||||||||||||||    
T  32221103 agagtgttcttaagaccatagtctctttttcggtttaatctccattcggaattaagaatggtcttaa 32221169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 42316173 - 42316243
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| || ||||| |||| ||| |||||| ||||||||||||  |||||||||||||||||||    
T  42316173 attaagagtgttattgagaccttagttcctattcggtataatgtcccttcgaaattaagaatggtcttaag 42316243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 47575190 - 47575109
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| |||||||||||  ||||||| ||| | || |||||||||||||| |||||||||||||||  |||||||    
T  47575190 attaagagtgttcttaagaccatatagtcccttgtcgatatattgtcccttcagaatcaagaatggtcttaagagcatagtc 47575109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 19102519 - 19102462
Alignment:
Q  112 ttaagaccatagtcccttttcggtttaatgtcccttcagaattaag-aatggtcttaa 168  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  19102519 ttaagactatagtcccttttcggtttaatgtccattcggaattaagaaatggtcttaa 19102462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 41817310 - 41817179
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||| | ||||||||| | ||| |||  || ||||||||||||||||  |||||||  || ||| ||||| | | |    
T  41817310 attaagagtgttcttaagaccatagtccatcttcggtttattatcctttcgaaaataagaatggtcttaagagcatagtccttcaattgtttatgtct-c 41817212  T
Q  199 ttcggaataaatggtaatttaagatcatagtcc 231  Q
    ||  ||||||||  || ||||||||||||||||    
T  41817211 tttagaataaataatattttaagatcatagtcc 41817179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 55150139 - 55150076
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatgg 162  Q
    |||||||||||| |||| | ||||||||||||| ||| |||||||||||||  |||||||||||    
T  55150139 attaagagtgttcttaatatcatagtccctttttggtataatgtcccttcatgattaagaatgg 55150076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 2820330 - 2820268
Alignment:
Q  117 accatagtcccttttcggtt-taatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||| |||||||    
T  2820330 accatagtctcttttcggttataatgtctcttcgaaattaagaatggtcttaagtgcatagtc 2820268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 12878664 - 12878558
Alignment:
Q  216 tttaagatcatagtccccttttcggtataatgtcgcttc-aaaattattaatgatct-----tatattcttcttcgactcttgaagaagttaaacgttag 309  Q
    ||||||||||||||||| ||||| |||||||||| |||| |||||||  ||||||||     || |||||||||| | ||||| |||||||| | |||||    
T  12878664 tttaagatcatagtccctttttcagtataatgtcccttcaaaaattaagaatgatcttaaaatacattcttcttcaattcttggagaagttacatgttag 12878565  T
Q  310 aatggtg 316  Q
    |||||||    
T  12878564 aatggtg 12878558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 13521551 - 13521698
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgt 196  Q
    |||||||||||| |||||||||||  ||||||| | | | || | ||||||| |||| |||||||||||||||  ||||| | ||| ||||||||| | |    
T  13521551 attaagagtgttcttaagaccatatagtcccttgtagatatattttcccttcggaatcaagaatggtcttaagagcatagcccctcaattatttatgtct 13521650  T
Q  197 ccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
      ||  ||||||||  || |||||||||||||| ||||||||||||||||    
T  13521651 -ttttagaataaataatattttaagatcatagt-cccttttcggtataat 13521698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 39320091 - 39319946
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| |||||| ||||||| |||||||||||| ||| | ||| |||  |||||||||||||||  ||||||| | || ||||||||| | ||    
T  39320091 attaagagtgttcttaagatcatagtctcttttcggtttattgt-ctttctgaacaaagaatggtcttaagagcatagtcccttcaattatttatgtctc 39319993  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
     || |  | ||||  || ||||||||||| ||||| |||||||||||||    
T  39319992 gttag--aaaaataatattttaagatcatggtccctttttcggtataat 39319946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 15020070 - 15020146
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||| |||| |||||||||||||||||||  | | |||||||| |||| ||||||| |||||||||||  |||||||    
T  15020070 aagaatgttcttaagaccatagtccctttgagatataatgtccattcaaaattaaggatggtcttaagagcatagtc 15020146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 16595606 - 16595646
Alignment:
Q  138 aatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  16595606 aatgtcccttcagaattaagaatggtcttaagaacatagtc 16595646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 55081303 - 55081379
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggttta--atgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| ||||| ||||||||||||  |||||||  | ||| |||||||||||||||||||||||||  |||||||    
T  55081303 aagagtgttcttaaggccatagtccctt--cggtttataacgtctcttcagaattaagaatggtcttaagaacatagtc 55081379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 3997628 - 3997707
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||| ||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  |||||||    
T  3997628 attaagagtgttcttaagactatagtccatcatcggtttattatcctttcggaaataagaatggtcttaagagcatagtc 3997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 42758401 - 42758472
Alignment:
Q  99 attaagagtgttgttaagaccatagtcc-cttttcggtttaatgtcccttc-agaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||  |||||||| |||||||||||| | ||||||||| | ||||||    
T  42758401 attaagagtgttcttaagaccatagtccatttttcggtataatgtcccttcgaaaattaagaacgatcttaa 42758472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 39319912 - 39319866
Alignment:
Q  291 tgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggt 336  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  39319912 tgaagaagttagacgttagaatggtagtaacaccatatttgagtggt 39319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 47575022 - 47574956
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | || || |||||||| | ||||||||||| |||| |||||||||||||||||    
T  47575022 tatattcttcttcaattcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 47574956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 33722560 - 33722601
Alignment:
Q  137 taatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  33722560 taatgtcccttcggaattaagaatggtcttaagaacatagtc 33722601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 40684499 - 40684540
Alignment:
Q  137 taatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||||| |||||||||||||||||||||  |||||||    
T  40684499 taatgtccctttagaattaagaatggtcttaagaacatagtc 40684540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 40125439 - 40125680
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||||| ||||||    
T  40125439 attaagagtgttcttaagaccatagtccctattcgttttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtc 40125538  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    ||||| |||||||  |||||||||||||||||||| ||||||||| |||| | |||||||| ||| ||||||||     ||||||||||||||| |||||    
T  40125539 cttcgaaataaataataatttaagatcatagtccctttttcggtacaatgccccttcaaaaatatgaatgatcttaaaatatattcttcttcgattcttg 40125638  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  40125639 aagaagttagacgttagaatggtgtaaaaccatatttgagtg 40125680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 17026479 - 17026236
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||| | ||||||    
T  17026479 attaagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtc 17026380  T
Q  198 cttcggaataaatggtaatttaagatcatagt--ccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactct 290  Q
    |||||||||||||  |||||||||||||||||  ||| |||||||||||||||| |||||||||||| ||||||||     ||||||||||||| | |||    
T  17026379 cttcggaataaataataatttaagatcatagtggcccgttttcggtataatgtcccttcaaaattatgaatgatcttaaaatatattcttcttcaattct 17026280  T
Q  291 tgaagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||  |||||| |  ||||||||||||||||||||||    
T  17026279 tgaagaagttggacgttaaagcggtgtaaaaccatatttgagtg 17026236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 17556971 - 17556728
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| || |  ||| | ||||||    
T  17556971 attaagagtgttcttaagaccatagtccctattcggtttaaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtc 17556872  T
Q  198 cttcggaataaatggtaatttaagatcatagt--ccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactct 290  Q
    |||||||||||||  |||||||||||||||||  ||| |||||||||||||||| |||||||||||| ||||||||     ||||||||||||| | |||    
T  17556871 cttcggaataaataataatttaagatcatagtggcccgttttcggtataatgtcccttcaaaattatgaatgatcttaaaatatattcttcttcaattct 17556772  T
Q  291 tgaagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||  |||||| |  ||||||||||||||||||||||    
T  17556771 tgaagaagttggacgttaaagcggtgtaaaaccatatttgagtg 17556728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 1910499 - 1910568
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1910499 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcataattaagaatggtcttaa 1910568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 31449431 - 31449576
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||| | || || ||| || | |     
T  31449431 attaagagtgttcttaagaccatagtccattttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataattcat-tat- 31449528  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||||||||||||  |  |||||||||||||| ||||||||||||||||    
T  31449529 cttcggaataaataatgttttaagatcatagt-cccttttcggtataat 31449576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 15951095 - 15951162
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15951095 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtctt 15951162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 38181787 - 38181869
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctct 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||   ||||||||||    
T  38181787 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaaaaatggtcttaaaaacatagtctct 38181869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 4237907 - 4237976
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  4237907 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatgatcttaa 4237976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 4242646 - 4242715
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  4242646 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatgatcttaa 4242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 18875932 - 18876066
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgt-c 197  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||   ||||||| ||||  ||  |||| || |    
T  18875932 attaagagtgttcttaagaccattgtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaaaaacatagtcactccgata-atataagtcc 18876030  T
Q  198 cttcggaataaatggtaat-ttaagatcatagtccc 232  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  18876031 cttcggaataaagagtaatattaagatcatagtccc 18876066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 19167198 - 19167131
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctt 166  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  19167198 attaagagtgttcttaagaccatagtcccttttcggtttaatgacccttcggaattaagaatggtctt 19167131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 1807998 - 1807929
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  1807998 attaagagtgttcttaagaccatagtcacttttcggtttaatgtccattcggaattaagaatggtcttaa 1807929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 44925465 - 44925534
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  44925465 attaagagtgttcttaagaccatagtccattttcggttcaatgtcccttcggaattaagaatggtcttaa 44925534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 17020902 - 17020833
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||  |||||||||||||||||||    
T  17020902 attaagagtgttcttaagaccatagtcctttctcggtttaatgtccctttggaattaagaatggtcttaa 17020833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 17551339 - 17551270
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||  |||||||||||||||||||    
T  17551339 attaagagtgttcttaagaccatagtcctttctcggtttaatgtccctttggaattaagaatggtcttaa 17551270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 17953513 - 17953674
Alignment:
Q  94 tcatcattaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttat 192  Q
    |||| |||||| ||||| |||| ||||| ||||||||| |||| ||||||||||||  |||||||||||||||||||  ||||||| || |  ||||| |    
T  17953513 tcataattaagtgtgttcttaaaaccatggtccctttttcggtataatgtcccttccaaattaagaatggtcttaagagcatagtcccttcgatattttt 17953612  T
Q  193 atgt-ccttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttc 254  Q
    |||| ||||  ||||||||  || ||||| ||||||||  ||||||||||| |||||| ||||    
T  17953613 atgtcccttaagaataaataatattttaacatcatagt-tccttttcggtacaatgtcccttc 17953674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 2966181 - 2966114
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||| |||||||| |||||| ||| ||| ||||||||||||||| ||||||||    
T  2966181 taagagtgttcttaagaccttagtccctgttcggtataacgtctcttcagaattaagaacggtcttaa 2966114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 37772234 - 37772086
Alignment:
Q  99 attaagagtgttgtt-aagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgt 196  Q
    |||||||||||| || ||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | |    
T  37772234 attaagagtgttctttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct 37772135  T
Q  197 ccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
     |||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  37772134 -ctttagaataaataatattttaagatcatggtccctttttcggtataat 37772086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 273
Target Start/End: Original strand, 15875269 - 15875415
Alignment:
Q  128 ttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc-ttcggaataaatggtaatttaagatcat 226  Q
    |||||||| |||| ||||||| ||||||| |||||| |||||   |||||| ||    ||||| ||||||| ||| ||||||||  || |||||||||||    
T  15875269 ttttcggtataatctcccttcggaattaaaaatggtattaagagtatagtccctttgatatttttatgtcccttcagaataaataatattttaagatcat 15875368  T
Q  227 agtccccttttcggtataatgtcgcttc-aaaattattaatgatctta 273  Q
    ||| |||||||||||| |||||| |||| |||||||  ||||||||||    
T  15875369 agt-cccttttcggtaaaatgtcccttcgaaaattaagaatgatctta 15875415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 4238072 - 4238138
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||| |||||||||||||||||    
T  4238072 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 4238138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 4242811 - 4242877
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||| |||||||||||||||||    
T  4242811 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 4242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 25367555 - 25367700
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctcca-ttatttatatgtcct 199  Q
    |||||||||| ||||||||||| ||| |  |||||||| | ||| ||  ||| ||||||||||||||||  ||||||| || || |||||||| | | ||    
T  25367555 taagagtgttcttaagaccataatccatcgtcggtttattatccttttggaaataagaatggtcttaagagcatagtcccttcatttatttatgtct-ct 25367653  T
Q  200 tcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  25367654 ttagaataaataatattttaagatcatggtccctttttcggtataat 25367700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 36684136 - 36684064
Alignment:
Q  99 attaagagtgttgttaagaccatagt---cccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| |||| |||||||||| ||   | |||||||||||||||||||||| ||||||||| |||||||||    
T  36684136 attaagaatgttcttaagaccatggtggtctcttttcggtttaatgtcccttcggaattaagagtggtcttaa 36684064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 24672867 - 24672933
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtct 165  Q
    ||||| |||||| ||||| || || || || |||||| ||||||||||||||||||||||| |||||    
T  24672867 attaaaagtgttcttaaggccttactctctattcggtataatgtcccttcagaattaagaaaggtct 24672933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 26779667 - 26779609
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaa 159  Q
    |||||||||| |||||||| |||||||| |||  | |||||||||||| ||||||||||    
T  26779667 taagagtgttcttaagaccttagtccctattcactataatgtcccttcggaattaagaa 26779609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15875359 - 15875416
Alignment:
Q  112 ttaagaccatagtcccttttcggtttaatgtcccttc-agaattaagaatggtcttaa 168  Q
    |||||| |||||||||||||||||  ||||||||||| | ||||||||||| ||||||    
T  15875359 ttaagatcatagtcccttttcggtaaaatgtcccttcgaaaattaagaatgatcttaa 15875416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 34818437 - 34818502
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggt 336  Q
    ||||| ||||||| | ||||| |||||||| | ||||||||||| |||| ||||||||||||||||    
T  34818437 tatatacttcttcaattcttggagaagttagatgttagaatggtagtaataccatatttgagtggt 34818502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 8330930 - 8331077
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    ||||||||| || ||||||||||||||| |  | |||||| | ||| |||  || ||||||||||||||||  ||||||| | || ||||||||| | |     
T  8330930 attaagagtattcttaagaccatagtccatcgttggtttattatcctttcgaaaataagaatggtcttaagagcatagtcccttcaattatttatttct- 8331028  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || |||||||||||  |||| |||||||||||||    
T  8331029 ctttagaataaataatattttaagatcatgatccctttttcggtataat 8331077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 19954766 - 19954690
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa--tgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| ||||| |||||||| |||  ||||||||  ||||||||| |||| |||||||||||||||  |||||||    
T  19954766 aagagtgttcttaaggccatagtctctt--cggtttaaaatgtcccttcggaataaagaatggtcttaagaacatagtc 19954690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 14509523 - 14509285
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| || |  ||||| |||||||    
T  14509523 attaagagtgttcttaagaccatagtcccttttcagtttaatgtaccttcagaattaagaatagtcttaagttcatagtcccttcgatatttttatgtcc 14509424  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatct-----tatattcttcttcgactcttga 293  Q
    ||| | ||||||  ||||||||||||||||| | ||||||||||||||||| |||||||||||| |||||| |     ||||||||||||||| ||||||    
T  14509423 ttc-gtataaataataatttaagatcatagt-ctcttttcggtataatgtcccttcaaaattatgaatgatattaaaatatattcttcttcgattcttga 14509326  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    | |||||| ||||||| ||||||||||||||||||||||||    
T  14509325 aaaagttagacgttagtatggtgtaaaaccatatttgagtg 14509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 336
Target Start/End: Complemental strand, 17914138 - 17913895
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcct 199  Q
    ||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||| ||||||| ||    ||||  ||||| ||    
T  17914138 ttaagagtgttcttaagaccatagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccctttgatattattatgttct 17914039  T
Q  200 tcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttc--aaaattattaatgatct-----tatattcttcttcgactcttg 292  Q
    ||| |||||||  || ||||||||||||||| | |||||||||||  ||||||||  |||||||| |||| |||     |||||| ||||| || |||||    
T  17914038 tcgcaataaataatattttaagatcatagtctctttttcggtatagagtcgcttcgaaaaattatgaatgttcttaaaatatatttttctttgattcttg 17913939  T
Q  293 aagaagttaaacgttagaatggtgtaaaaccatatttgagtggt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  17913938 aagaagttagacgttagaatggtgtaaaaccatatttgagtggt 17913895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 16835703 - 16835771
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16835703 ttaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 16835771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 2699638 - 2699699
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaat 160  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2699638 attaagagtgttcttaaaaccatagtcccttttcggtttaatgtcccttcagaattaagaat 2699699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 4156898 - 4156967
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  4156898 attaagattgttcttaagaccatagtcctttttcggtttaatgtcccttcggaattaagaatggtcttaa 4156967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 12689525 - 12689456
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  12689525 attaagagtgtttttaagaccatagtccattttcggtttaacgtcccttcggaattaagaatggtcttaa 12689456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 11570288 - 11570358
Alignment:
Q  99 attaagagtgttgttaagaccatagtccct-tttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  11570288 attaagagtgttcttaagaccatagtccctctttcgatttaatgtcccttcggaattaagaatggtcttaa 11570358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 22610097 - 22610015
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctct 181  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||| |||| |||||||||||||| |||||  ||||||||||    
T  22610097 attaagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctct 22610015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 6407406 - 6407475
Alignment:
Q  100 ttaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  6407406 ttaagagtgttcttaagaccatagtccctttttcggtttaatgttccttcggaattaagaatggtcttaa 6407475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 11559760 - 11559830
Alignment:
Q  99 attaagagtgttgttaagaccatagtccct-tttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||| ||||  |||||||||||||| |||||||||||||||||||    
T  11559760 attaagagtgttcttaagaccatagtccctctttcaatttaatgtcccttcggaattaagaatggtcttaa 11559830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 17964101 - 17964170
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||| ||||||| | ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  17964101 attatgagtgttctcaagaccatagtcctttttcgttttaatgtcccttcggaattaagaatggtcttaa 17964170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 22694852 - 22694921
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||    
T  22694852 attaagagtgttcttaagaccttagtccctattcggtataatgtcccttaagaattaagaaaggtcttaa 22694921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 12405902 - 12405969
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||  |||||||    
T  12405902 taagagtgttcttaagaccttagtccctattcggtataatgtcccttcagaattaagaaaagtcttaa 12405969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 11534250 - 11534320
Alignment:
Q  99 attaagagtgttgttaagaccatagtccct-tttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||| ||||  |||||||||||||| ||||||| |||||||||||    
T  11534250 attaagagtgttcttaagaccatagtccctctttcaatttaatgtcccttcggaattaaaaatggtcttaa 11534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 33687191 - 33687261
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||||    
T  33687191 attaagagtcttcttaagaccatagtccctttttcggtttaatgtcccttcgcaattaagtatggtcttaa 33687261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 20748053 - 20748098
Alignment:
Q  289 cttgaagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  20748053 cttgaagaagttaaaagttagaatggtgtaaaaccatatttgagtg 20748098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 11428506 - 11428440
Alignment:
Q  103 agagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||| ||||||    
T  11428506 agagtgttcttaagaccatagtccctttttcggtttaatgttccttcggaattaataatgatcttaa 11428440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 20747845 - 20747914
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| |||| |||||||||||||| |||| || | |||||||||||| |||||||||||| ||||||    
T  20747845 attaagaatgttcttaagaccatagtctctttccgatataatgtcccttcggaattaagaatgatcttaa 20747914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 25313997 - 25314066
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||   ||||||||| |||||  |||||||||||| ||||||    
T  25313997 attaagagtgtttttaagaccatagtcccttgctggtttaatgcccctttcgaattaagaatgatcttaa 25314066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 26201491 - 26201560
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||   ||||||||| |||||  |||||||||||| ||||||    
T  26201491 attaagagtgtttttaagaccatagtcccttgctggtttaatgcccctttcgaattaagaatgatcttaa 26201560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19994941 - 19995008
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||| | |||||||| ||| || ||||||||||||||||||||||| ||| ||||    
T  19994941 taagagtgtttttaagatcttagtccctattcagtataatgtcccttcagaattaagaaaggttttaa 19995008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 14575239 - 14575169
Alignment:
Q  100 ttaagagtgttgttaagaccatagtc-ccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||||||||||||||||| | |||| | | || |||||||||| |||| ||||||||||||||    
T  14575239 ttaagagtgttgttaagaccatagtctctttttagatatagtgtcccttcaaaatttagaatggtcttaag 14575169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 2759957 - 2760098
Alignment:
Q  104 gagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatag-tctctccattatttatatgtccttcg 202  Q
    ||||||| ||||||||| | | ||| ||||||||| ||||||||| |  |||||||||||||||||  ||||| || ||| ||||||||| | | |||      
T  2759957 gagtgttcttaagaccacaattcctgttcggtttattgtcccttcggttttaagaatggtcttaagagcatagttccctcaattatttatgtct-cttta 2760055  T
Q  203 gaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    ||||||||  || ||||||| |||||| || |||||||||||||    
T  2760056 gaataaataatattttaagaccatagt-ccattttcggtataat 2760098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 2077340 - 2077299
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaat 140  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  2077340 attaaaagtgttcttaagaccataatcccttttcggtttaat 2077299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 24588745 - 24588817
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    ||||| |||||| |||||||||||  || | |||||||| || ||||||||| |||| |||||||||||||||    
T  24588745 attaaaagtgtttttaagaccatatagttcattttcggtatattgtcccttcggaatcaagaatggtcttaag 24588817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 15991228 - 15991276
Alignment:
Q  113 taagaccatagtcccttttcggtttaatgtcccttcagaattaagaatg 161  Q
    ||||||||||||| ||||||| |||| ||||| |||| |||||||||||    
T  15991228 taagaccatagtctcttttcgatttattgtccattcaaaattaagaatg 15991276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 35130084 - 35130040
Alignment:
Q  137 taatgtcccttcagaattaagaatggtcttaagttcatagtctct 181  Q
    |||||||| ||| ||||||||||||||||||||  ||||||||||    
T  35130084 taatgtccattcggaattaagaatggtcttaagaacatagtctct 35130040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 333
Target Start/End: Original strand, 12965431 - 12965667
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    ||||||| |||| | ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |  ||||| ||| ||     
T  12965431 attaagaatgttctgaagaccatactcccttttcggtttaatgtcccttcgaaattaagaatggtcttaagttcatagtcccttcggtatttttatatca 12965530  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatctt---atat-tcttcttcgactcttgaa 294  Q
    ||||||||||||  ||||||||||||||||| |||||||| |||||||||| |||||||||||  |||||||||   |||| ||||||| ||||||||||    
T  12965531 ttcggaataaataataatttaagatcatagt-cccttttcagtataatgtc-cttcaaaattacgaatgatcttaaaatatatcttctttgactcttgaa 12965628  T
Q  295 gaagttaaacgttagaatggtgtaaaaccatatttgagt 333  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  12965629 gaagttagacgttagaatggtgtaaaatcatatttgagt 12965667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 12971290 - 12971427
Alignment:
Q  202 ggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatctta-----tattcttcttcgactcttgaaga 296  Q
    |||||||||  |||||||||| ||||||||| ||||| |||||||||| |||||||||||  ||||||||||     |||||||||||||||||||||||    
T  12971290 ggaataaataataatttaagaacatagtccctttttcagtataatgtcccttcaaaattacgaatgatcttaaaatatattcttcttcgactcttgaaga 12971389  T
Q  297 agttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
     ||||  |||||||||||||||||||| ||||||||||    
T  12971390 ggttagtcgttagaatggtgtaaaaccttatttgagtg 12971427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 8888458 - 8888313
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| | || || ||| || | |     
T  8888458 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataattcat-tct- 8888361  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||||||||||||  |  |||||||||||||| ||||||||||||||||    
T  8888360 cttcggaataaataatgttttaagatcatagt-cccttttcggtataat 8888313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 18472557 - 18472490
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472557 taagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 18472490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3034171 - 3034102
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3034171 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 3034102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3673114 - 3673045
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3673114 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 3673045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3693146 - 3693077
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3693146 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 3693077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 8070206 - 8070137
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8070206 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 8070137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 8883698 - 8883628
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  8883698 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaaaaatggtcttaag 8883628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 20520507 - 20520438
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  20520507 attaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatgatcttaa 20520438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 39775270 - 39775339
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  39775270 attaagagtgttattaagaccatagtcccttttgggtttaatgtcccttcggaattaagaatggtcttaa 39775339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 23661009 - 23661077
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  23661009 ttaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 23661077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 24037916 - 24037984
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24037916 ttaagagtgttcttaagaccatagtcgcttttcggtttaatgtcccttcggaattaagaatggtcttaa 24037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 14438244 - 14438311
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14438244 taagagtattcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 14438311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 18467775 - 18467708
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18467775 taagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 18467708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 46964563 - 46964480
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctct 181  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||   ||||||||||    
T  46964563 attaagagtgttcttaagaccatagtccctttttcggtttaatgtccctttagaattaagaatggtcttaaaaacatagtctct 46964480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 757909 - 757978
Alignment:
Q  100 ttaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  757909 ttaagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaa 757978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 23665668 - 23665736
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  23665668 ttaagagtgttcttaagaccatagtcgctttttggtttaatgtcccttcggaattaagaatggtcttaa 23665736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 7570761 - 7570830
Alignment:
Q  100 ttaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  7570761 ttaagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaa 7570830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 27709482 - 27709413
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||    
T  27709482 attaagagtgttcttaagaccatagttcctttttggtttaatgtctcttcggaattaagaatggtcttaa 27709413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 29350792 - 29350723
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  29350792 attaagagtgttcttaagatcatagtcccttttcggtttaatgtccctttggaattaataatggtcttaa 29350723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3419540 - 3419470
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  3419540 attaagggtgttcttaagaccatagtccctttttcggtttaatgttccttcggaattaagaatggtcttaa 3419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 55326327 - 55326259
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||    
T  55326327 attaagagtgttcttaagaccatagtcgcttttcggttgaatgt-ccttcggaattaagaatggtcttaa 55326259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 10585756 - 10585903
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | ||    
T  10585756 attaagagtgtttttaagaccatagtccatcatcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtctc 10585855  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
     ||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  10585856 att-agaataaataatattttaagatcatggtccctttttcggtataat 10585903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 3656773 - 3656840
Alignment:
Q  99 attaagagtgttgttaagaccatagtccc-ttttcggtttaatgtcccttcagaattaagaatggtct 165  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||  |||| ||||||||||    
T  3656773 attaagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcgaaattcagaatggtct 3656840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 55431833 - 55431784
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttc 148  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  55431833 attaagagtgttcttaagaccatagtcccttttcggtttaatgtaccttc 55431784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 53358625 - 53358546
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| |||||| |||||||| ||||||||||| ||||| |||  || ||||||||||||||||  |||||||    
T  53358625 attaagagtgttattaagatcatagtcctttttcggtttattgtcctttcgcaactaagaatggtcttaagagcatagtc 53358546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 35456505 - 35456575
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||| ||||||| |||||||| || | ||| |||||| |||||||||||| ||||||||||||||||||||    
T  35456505 attatgagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaag 35456575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 4662658 - 4662582
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa--tgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| ||||| ||||||||||||  ||||||||  ||||||||| ||||||||||||||||||||  |||||||    
T  4662658 aagagtgttcttaaggccatagtccctt--cggtttaaaatgtcccttcggaattaagaatggtcttaagaacatagtc 4662582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 45904112 - 45904258
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | |     
T  45904112 attaagagtgttcttaagaccatagtccatcgtcggtttactatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 45904210  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| || || |||||||||||||    
T  45904211 ctttagaataaataatattttaagatcatggt-ccattttcggtataat 45904258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 3034006 - 3033940
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  3034006 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 3033940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 3672949 - 3672883
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  3672949 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 3672883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 3692981 - 3692915
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  3692981 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 3692915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 8070041 - 8069975
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  8070041 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 8069975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 32747692 - 32747762
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||  |||| |||| |||| |||||||||  ||||||| ||  ||||||||||||||||||||    
T  32747692 attaagagtgtacttaaaaccaaagtctcttttcggtacaatgtcctttgtgaattaagaatggtcttaag 32747762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 49019930 - 49019864
Alignment:
Q  101 taagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtctta 167  Q
    |||||||||| ||||||||||| ||| |||| | |||| |||| ||| |||||||| ||||||||||    
T  49019930 taagagtgttcttaagaccataatccatttttgatttattgtcactttagaattaaaaatggtctta 49019864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 18699344 - 18699389
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcc 144  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||    
T  18699344 attaagagtgttcttaagaccataatccctcttctgtttaatgtcc 18699389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 16983419 - 16983379
Alignment:
Q  138 aatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  16983419 aatgtcccttcggaattaagaatggtcttaagaacatagtc 16983379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 3880531 - 3880296
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||| |||||  ||||| |||||||||||||||||||||| || |  ||| | |||||||    
T  3880531 attaagagtgttcttaagactatagtccattttcggtttaatgttccttcgaaattatgaatggtcttaagttcatagtcccttcgatatatctatgtcc 3880432  T
Q  199 ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttcaaaattattaatgatctta-----tattcttcttcgactcttga 293  Q
    || |||||||||   |||  |||||||||||||| ||||| |||||||||| ||||||| |||| ||||||||||     ||||||||||||| ||||||    
T  3880431 tttggaataaat---aat--aagatcatagtccctttttcagtataatgtcccttcaaatttatgaatgatcttaaaatatattcttcttcgattcttga 3880337  T
Q  294 agaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    | |||||| || ||||||| ||||||||||||| |||||||    
T  3880336 acaagttagacattagaattgtgtaaaaccataattgagtg 3880296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 329
Target Start/End: Complemental strand, 16372949 - 16372711
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtcc 198  Q
    |||||||||||| |||||| | | ||  ||||| ||| |||||||||||| ||||||||||||||||||||  ||||||| || |  ||||| |||||||    
T  16372949 attaagagtgttcttaagatcttggtttctttttggtataatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcc 16372850  T
Q  199 -ttcggaataaatggtaatttaagatcatagtccccttttcggtataatgtcgcttc--aaaattattaatgatct-----tatattcttcttcgactct 290  Q
     ||||||||||||  || ||||||||||||||||| |||||||||||||||| ||||  |||||||| ||||||||     ||||||||| ||| | |||    
T  16372849 cttcggaataaataatagtttaagatcatagtccctttttcggtataatgtcacttcaaaaaattatgaatgatcttaaaatatattcttattcaattct 16372750  T
Q  291 tgaagaagttaaacgttagaatggtgtaaaaccatattt 329  Q
    ||||||||||| | ||||||||| ||||  |||||||||    
T  16372749 tgaagaagttagatgttagaatgatgtagcaccatattt 16372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 26341760 - 26341691
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26341760 attaagagtgttcttaagaccataatcccttttcggtttaatgtcccttcggaattaagaatggtcttaa 26341691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 42626135 - 42626201
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  42626135 aagagtgttcttaagaccatagtcccttttcggtttaatgtccctccggaattaagaatggtcttaa 42626201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 2595375 - 2595305
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  2595375 attaagagtgttcttaagaccgtagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaa 2595305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 12799938 - 12799868
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  12799938 attaagagtgttattaagaccatagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaa 12799868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 4930772 - 4930704
Alignment:
Q  101 taagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  4930772 taagagtgttcttaagaccatagtccctttttcggtttaatgtcccttcgaaattaagaatggtcttaa 4930704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 4580050 - 4579971
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||  |||||||||||||||||| |||||  |||||||    
T  4580050 attaagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtc 4579971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 8268847 - 8268777
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||| |||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  8268847 attaacagtgttcttaagacgatagtccctttttcggtttaatgtcccttcggaattaagaatggtcttaa 8268777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 44422681 - 44422746
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtc 164  Q
    |||||||||||| ||||||||||||| | ||||| ||||||||||||||| |||||||||||||||    
T  44422681 attaagagtgttcttaagaccatagttctttttccgtttaatgtcccttcggaattaagaatggtc 44422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 19640828 - 19640760
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||    
T  19640828 ttaagagtgttcttaagaccatagacccttttcggtttattgtcctttcaaaactaagaatggtcttaa 19640760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 27256764 - 27256617
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | |     
T  27256764 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 27256666  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| |||||||||||||    
T  27256665 ctttagaataaataatattttaagatcatggtccctttttcggtataat 27256617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 30258653 - 30258589
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggt 163  Q
    ||||||||| || |||||||||| || |||||| |||||||||||||||| ||||||||||||||    
T  30258653 attaagagtcttcttaagaccattgtgccttttgggtttaatgtcccttcggaattaagaatggt 30258589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 9650693 - 9650759
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | |||||||||||||| | ||||||||||| |||| |||||||||||||||||    
T  9650693 tatattcttcttcaattcttgaagaagttagatgttagaatggtcgtaacaccatatttgagtggtt 9650759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 26286895 - 26286940
Alignment:
Q  289 cttgaagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  26286895 cttgaagaagttaaaggttagagtggtgtaaaaccatatttgagtg 26286940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 26286700 - 26286756
Alignment:
Q  112 ttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    ||||||||| ||| | |||||||| |||||||||||| |||||||||||||||||||    
T  26286700 ttaagaccacagttcattttcggtataatgtcccttcggaattaagaatggtcttaa 26286756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 40864931 - 40865078
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||  ||||||| | || ||||||||| | |     
T  40864931 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 40865029  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||| ||||  || | ||||||||| ||||| |||||||||||||    
T  40865030 ctttagaaaaaataatattctaagatcatggtccctttttcggtataat 40865078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 23866601 - 23866453
Alignment:
Q  99 attaagagtgttgttaagacc--atagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatg 195  Q
    |||||||||||| ||||||||  |||||||||| ||| | || ||||||||| |||| |||||| ||||||||  ||||||| | || ||||||||| |     
T  23866601 attaagagtgttcttaagaccatatagtcccttgtcgatatattgtcccttcggaatcaagaatagtcttaagagcatagtcccttcaattatttatgtc 23866502  T
Q  196 tccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |  ||  ||||||||  || |||||||||||||| ||||||||||||||||    
T  23866501 t-ttttagaataaataatattttaagatcatagt-cccttttcggtataat 23866453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 9650526 - 9650673
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgt 196  Q
    |||||||||||| |||||||||||  ||||||| | | | || | ||||||| |||| |||||||||||||||  ||||| | ||| ||||||||| | |    
T  9650526 attaagagtgttcttaagaccatatagtcccttgtagatatattttcccttcggaatcaagaatggtcttaagagcatagcccctcaattatttatgtct 9650625  T
Q  197 ccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
      ||  ||||||||  || |||||||||||||| ||||||||||||||||    
T  9650626 -ttttagaataaataatattttaagatcatagt-cccttttcggtataat 9650673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 23866433 - 23866367
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| | |||||||||||||| | ||||| ||||| |||| |||||||||||||||||    
T  23866433 tatattcttcttcaattcttgaagaagttagatgttagtatggtcgtaacaccatatttgagtggtt 23866367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 10498446 - 10498381
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggt 336  Q
    ||||||||||||| | ||||| |||||||| | ||||||||||| |||| ||||||||||||||||    
T  10498446 tatattcttcttcaattcttgtagaagttatatgttagaatggtggtaacaccatatttgagtggt 10498381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 10503475 - 10503410
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggt 336  Q
    ||||||||||||| | ||||| |||||||| | ||||||||||| |||| ||||||||||||||||    
T  10503475 tatattcttcttcaattcttgtagaagttatatgttagaatggtggtaacaccatatttgagtggt 10503410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 10387903 - 10387966
Alignment:
Q  105 agtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||| |||||||| |||||| | |||||| |||||||||||| ||||||||||  |||||||    
T  10387903 agtgtttttaagaccttagtccttattcggtataatgtcccttcggaattaagaaaagtcttaa 10387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 6898003 - 6898078
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggtttaa-tgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| |||||  |||||||||||  |||||||| |||| |||| ||||||||||||||||||||  |||||||    
T  6898003 aagagtgttcttaaggtcatagtccctt--cggtttaaatgtctcttcggaattaagaatggtcttaagaacatagtc 6898078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 16580757 - 16580716
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaat 140  Q
    |||||||||||| ||||||||||| ||||| |||||||||||    
T  16580757 attaagagtgttcttaagaccataatccctcttcggtttaat 16580716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 13313828 - 13313876
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtccctt 147  Q
    |||||||||||| ||||||||||| ||  |||| |||||||||||||||    
T  13313828 attaagagtgttcttaagaccatattcattttttggtttaatgtccctt 13313876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 9447 - 9526
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||||||    
T  9447 attaagagtgttcttaagaccatagtcccttttcggtttaatgtccattcggaattaagaatggtcttaagagcatagtc 9526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 9612 - 9678
Alignment:
Q  272 tatattcttcttcgactcttgaagaagttaaacgttagaatggt-gtaaaaccatatttgagtggtt 337  Q
    ||||||||||||| |||| || |||||||| | ||||||||||| |||  |||||||||||||||||    
T  9612 tatattcttcttcaactcatggagaagttagatgttagaatggtcgtagcaccatatttgagtggtt 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 7658 - 7589
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  7658 attaagagtgttattaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 7589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 29726 - 29657
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29726 attaagagtgttcttaagatcatattccctcttcggtttaatgtcccttcagaattaagaatggtcttaa 29657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 25999 - 25938
Alignment:
Q  107 tgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaa 168  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  25999 tgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa 25938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 256341 - 256270
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagt 170  Q
    ||||||| |||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  256341 attaagaatgttcttaagaccgtagtcccttttcggtttattgtcccttcagaataaagaatggtattaagt 256270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 6916 - 6823
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttat 192  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||||| |||||||   |||||||| |||||  |||||||||| |||| |||||    
T  6916 attaagagtgttcttaagaccataatccctcttctgtttaatgtcctttcagaacatagaatggttttaagagcatagtctcttcattttttat 6823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 4525 - 4463
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatg 161  Q
    |||||| ||||| ||||||||||||| | |||||||| |||||||||||| ||||||||||||    
T  4525 attaagtgtgttcttaagaccatagttcattttcggtataatgtcccttcggaattaagaatg 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 4319 - 4274
Alignment:
Q  289 cttgaagaagttaaacgttagaatggtgtaaaaccatatttgagtg 334  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  4319 cttgaagaagttaaaggttagagtggtgtaaaaccatatttgagtg 4274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 47539 - 47609
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||||||| ||||||||||||||||    
T  47539 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcagaaataagaatggtcttaag 47609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 52483 - 52553
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaag 169  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||| ||| ||||||||||||||||    
T  52483 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcggaaataagaatggtcttaag 52553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 83583 - 83434
Alignment:
Q  99 attaagagtgttgttaagaccata--gtcccttt-tcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatat 194  Q
    |||||||||||| |||||||||||  |||||||| ||||| || |||||||||||||| ||||| |||||||||  ||||||| | || || ||||||||    
T  83583 attaagagtgttcttaagaccatatagtccctttgtcggtatattgtcccttcagaatcaagaacggtcttaagagcatagtcccttcaataatttatat 83484  T
Q  195 gtccttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
      | ||  ||||||||  || |||||||||||||| || |||||||||||||    
T  83483 -ccttttagaataaataatattttaagatcatagt-ccattttcggtataat 83434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 49550 - 49616
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtct 165  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||||||| ||||||||||||    
T  49550 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcagaaataagaatggtct 49616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 149084 - 149018
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtct 165  Q
    |||||||||||| ||||||||||||||| |  |||||||| | ||| ||||||| ||||||||||||    
T  149084 attaagagtgttcttaagaccatagtccatcgtcggtttattatcctttcagaaataagaatggtct 149018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 145973 - 146130
Alignment:
Q  99 attaagagtgttgttaagaccatagtccctttt-cggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctctccattatttatatgtc 197  Q
    ||||||||| || |||||| ||||||||||||| |||| |||||||| |||| || |||||||||| |||||  ||||||| || |  ||||| ||||||    
T  145973 attaagagt-ttcttaagagcatagtccctttttcggtataatgtccattcaaaaataagaatggttttaagagcatagtcccttcgatatttttatgtc 146071  T
Q  198 ctt-cggaataaatggtaatttaagatcatagtcccctttt-cggtataatgtcgcttc 254  Q
    ||| | ||||| ||  || ||||||||||||| | | |||| |||||||||||| ||||    
T  146072 ctttcagaatatataatattttaagatcatagcctcttttttcggtataatgtcccttc 146130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 5864 - 5940
Alignment:
Q  102 aagagtgttgttaagaccatagtcccttttcggttta--atgtcccttcagaattaagaatggtcttaagttcatagtc 178  Q
    ||||||||| ||||| ||||||||||||  |||||||  ||||||||||  |||||||||||||||||||  |||||||    
T  5864 aagagtgtttttaaggccatagtccctt--cggtttataatgtcccttcgaaattaagaatggtcttaagaacatagtc 5940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 148807 - 148853
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtccct 146  Q
    ||||||||||| ||||||||||| ||||| ||||||||| |||||||    
T  148807 ttaagagtgttcttaagaccataatccctattcggtttattgtccct 148853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 163987 - 164033
Alignment:
Q  100 ttaagagtgttgttaagaccatagtcccttttcggtttaatgtccct 146  Q
    ||||||||||| ||||||||||||||||| |||||| || |||||||    
T  163987 ttaagagtgttcttaagaccatagtccctgttcggtatattgtccct 164033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 807 - 954
Alignment:
Q  99 attaagagtgttgttaagaccatagtcccttttcggtttaatgtcccttcagaattaagaatggtcttaagttcatagtctc-tccattatttatatgtc 197  Q
    ||||| |||||| |||||| |||||||| |  |||||||| | ||| |||  || ||||||||||||||||  ||||||| | || ||||||||| | |     
T  807 attaaaagtgttcttaagatcatagtccatcgtcggtttattatcctttcgaaaataagaatggtcttaagagcatagtcccttcaattatttatgtct- 905  T
Q  198 cttcggaataaatggtaatttaagatcatagtccccttttcggtataat 246  Q
    |||  ||||||||  || ||||||||||| ||||| |||||| ||||||    
T  906 ctttagaataaataatattttaagatcatggtccctttttcgttataat 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 362 times since January 2019
Visitors: 6703