View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0916_low_25 (Length: 323)
Name: NF0916_low_25
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 14073412 - 14073576
Alignment:
| Q |
69 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
168 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14073412 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccat |
14073511 |
T |
|
| Q |
169 |
nnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattcttg |
233 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14073512 |
aaaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattcttg |
14073576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 14080889 - 14081051
Alignment:
| Q |
69 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
168 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14080889 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataa-tttcttcc-a |
14080986 |
T |
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| Q |
169 |
nnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattcttg |
233 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14080987 |
taaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattcttg |
14081051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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