View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0916_low_39 (Length: 209)
Name: NF0916_low_39
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 47193831 - 47193704
Alignment:
| Q |
1 |
aagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattctt |
100 |
Q |
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| T |
47193831 |
aagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattctt |
47193732 |
T |
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| Q |
101 |
gaaaaagcagaactatcacgttcatctc |
128 |
Q |
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| T |
47193731 |
gaaaaagcagaactatcacgttcatctc |
47193704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26698512 - 26698590
Alignment:
| Q |
14 |
ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
92 |
Q |
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| T |
26698512 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26698590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26733675 - 26733753
Alignment:
| Q |
14 |
ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
92 |
Q |
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| T |
26733675 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26733753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 26750879 - 26750914
Alignment:
| Q |
57 |
aaacccattcaggtgccatataacctcttgtccctc |
92 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
26750879 |
aaacccattcaggtgccatgtaacctcttgtccctc |
26750914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 39132486 - 39132397
Alignment:
| Q |
4 |
caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct |
93 |
Q |
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|
||||||||||||||||||||||||||| ||||| || || || | | ||| ||||||||||||| |||||||| |||||||| ||||| |
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| T |
39132486 |
caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatatatcctcttgttcctct |
39132397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
| Q |
61 |
ccattcaggtgccatataacctcttgtccctcttatt |
97 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
23466619 |
ccattctggtgccatataacctcttgttcctcttatt |
23466655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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