View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0916_low_4 (Length: 606)
Name: NF0916_low_4
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0916_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 10 - 587
Target Start/End: Original strand, 41218374 - 41218951
Alignment:
| Q |
10 |
gcagagaccttaaaattcagatattaagatgtgagagcctccagtattaaagagaggaaagagtggttcatccagagaaagtagagaacttctaaagcct |
109 |
Q |
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| T |
41218374 |
gcagagaccttaaaattcagatattaagatgtgagagcctccagtattaaagagaggaaagagtagttcatccagagaaagtagagaacttctaaagcct |
41218473 |
T |
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| Q |
110 |
agccattaataagctagcttatagcataaatgggagtcctatttttcatctctagtaacaagtataactatgagtcgaagtaacagaatctcagacagta |
209 |
Q |
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| T |
41218474 |
agccattaataagctagcttatagcataaatgggagtcctatttttcatctctagtaacaagtataactatgagtcgaagtaacagaatctcagacagta |
41218573 |
T |
|
| Q |
210 |
gtttctaattgacttttgttatttacttttgcagtgataatttcattaattcatatcaagaatgaatgcaatttccatcatatatatactaaagaaaaca |
309 |
Q |
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| T |
41218574 |
gtttctaattgacttttgttatttacttttgcagtgataatttcattaattcatatcaagaatgaatgcaatttccatcatatatatactaaagaaaaca |
41218673 |
T |
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| Q |
310 |
ctgcacgataacatgatctagcagaaaaacaatttatatttggcttattgtaaagaaacagttgaatgattaggaaaaactattagcatcctagaatctt |
409 |
Q |
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| T |
41218674 |
ctgcacgataacatgatctagcagaaaaacaatttatatttggcttattgtaaagaaacagttgaatgattaagaaaaactattagcatcctagaatctt |
41218773 |
T |
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| Q |
410 |
ataaagcaaatttatccnnnnnnnatataccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattgaactcac |
509 |
Q |
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| T |
41218774 |
ataaaccaaatttatcctttttttatataccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattgaactcac |
41218873 |
T |
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| Q |
510 |
agtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttctcctccatttagatatctgtgaac |
587 |
Q |
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| T |
41218874 |
agtgttcttgttttctgatatcattctctcagtagaaagatagtcttttgtttctcctccatttagatatctgtgaac |
41218951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 564
Target Start/End: Original strand, 41224398 - 41224517
Alignment:
| Q |
439 |
ccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattg-aactcacagtgttcttgttttctgatatcattctc |
537 |
Q |
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| T |
41224398 |
ccactgtgtttctctggctactgacaaaagagacatactagaaactgatgt-aacatgaaattgttactcacag------cgttttctgatatcattctt |
41224490 |
T |
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| Q |
538 |
tcagtagaaagatagtctcttgtttct |
564 |
Q |
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| T |
41224491 |
tcagtaggaagatagtctcttgcttct |
41224517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 41226040 - 41226103
Alignment:
| Q |
517 |
ttgttttctgatatcattctctcagtagaaagatagtctcttgtttctcctccatttagatatc |
580 |
Q |
| |
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| T |
41226040 |
ttgttttctgatatgattctttgagtaggaagatagtctcctgtttctcctccatttagatatc |
41226103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 426
Target Start/End: Original strand, 41224157 - 41224327
Alignment:
| Q |
254 |
attaattcatatcaagaatgaatgcaatttccatcatatatatactaaagaaaacactgcacgataacatgatctagcagaaaaacaatttatatttggc |
353 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| | || ||| ||| || ||| ||||| | || |||| ||| |||| |||||||||| |
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| T |
41224157 |
attatttcatatcaagaatgaatgtaatttccatcatataca--ctgaagcaaaaacaacaccataacctaataatgcagcaaa-caatatatatttggc |
41224253 |
T |
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| Q |
354 |
ttattgtaaagaaacagttgaatgattaggaaaaactatta-gcatcctagaatcttataaagcaaatttatcc |
426 |
Q |
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| T |
41224254 |
ttattgcaaggaaacagctgaataagtaagaaaaacttttatgcttcatacaatcttataaaccaaatttatcc |
41224327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 41224023 - 41224069
Alignment:
| Q |
120 |
aagctagcttatagcataaatgggagtcctatttttcatctctagta |
166 |
Q |
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| T |
41224023 |
aagctagcttatagcataaatgggaatcccatttttcatttctagta |
41224069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 439 - 564
Target Start/End: Complemental strand, 555005 - 554881
Alignment:
| Q |
439 |
ccactatgttcctcttgctactgactaaagagacatactagaaactgacgtaaacatgaaattg-aactcacagtgttcttgttttctgatatcattctc |
537 |
Q |
| |
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|||| ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
555005 |
ccacaatgttcctcctcttaccgactaaagagacatactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctc |
554908 |
T |
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| Q |
538 |
tcagtagaaagatagtctcttgtttct |
564 |
Q |
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| T |
554907 |
tcagtaggaagatagtctcttgtttct |
554881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 1596993 - 1596908
Alignment:
| Q |
480 |
aaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttct |
564 |
Q |
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| T |
1596993 |
aaactgatctaaacatgaaattagaactcacagtgtttttgttttctgatatcattctgtcagtaggaaggtagtctcttgtttct |
1596908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 473 - 564
Target Start/End: Complemental strand, 1597799 - 1597707
Alignment:
| Q |
473 |
atactagaaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtctcttgtttct |
564 |
Q |
| |
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|||||||||||||| || ||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
1597799 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttct |
1597707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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