View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0916_low_6 (Length: 528)

Name: NF0916_low_6
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0916_low_6
NF0916_low_6
[»] chr3 (18 HSPs)
chr3 (29-235)||(6162687-6162893)
chr3 (41-161)||(6137615-6137735)
chr3 (29-161)||(6131812-6131944)
chr3 (29-161)||(13284738-13284870)
chr3 (359-432)||(53782276-53782349)
chr3 (162-339)||(54528855-54529034)
chr3 (162-235)||(44833470-44833543)
chr3 (161-240)||(47064863-47064942)
chr3 (159-235)||(53827666-53827742)
chr3 (162-224)||(4969875-4969937)
chr3 (159-241)||(11342887-11342969)
chr3 (160-236)||(3539666-3539742)
chr3 (162-234)||(53814567-53814639)
chr3 (161-236)||(30533882-30533957)
chr3 (162-235)||(15040681-15040754)
chr3 (162-207)||(44430418-44430463)
chr3 (162-235)||(44836483-44836556)
chr3 (163-207)||(13843626-13843670)
[»] chr1 (13 HSPs)
chr1 (340-447)||(2094211-2094321)
chr1 (161-236)||(2094366-2094441)
chr1 (160-240)||(11821158-11821238)
chr1 (161-235)||(3792559-3792633)
chr1 (161-235)||(39650195-39650269)
chr1 (162-242)||(37260911-37260991)
chr1 (163-243)||(42883751-42883831)
chr1 (161-217)||(5602943-5602999)
chr1 (161-236)||(35392108-35392183)
chr1 (174-236)||(35391487-35391549)
chr1 (162-235)||(33617644-33617717)
chr1 (162-215)||(49033755-49033808)
chr1 (162-218)||(3792296-3792352)
[»] chr5 (14 HSPs)
chr5 (159-332)||(17644507-17644681)
chr5 (258-339)||(7164274-7164355)
chr5 (162-241)||(11135741-11135820)
chr5 (162-223)||(6636919-6636980)
chr5 (230-339)||(1145776-1145886)
chr5 (161-218)||(3458013-3458070)
chr5 (161-217)||(25787864-25787920)
chr5 (166-237)||(30491798-30491869)
chr5 (161-224)||(34017635-34017698)
chr5 (158-237)||(36580219-36580298)
chr5 (162-244)||(25760509-25760591)
chr5 (192-241)||(3759583-3759632)
chr5 (258-307)||(40266539-40266588)
chr5 (161-241)||(6158942-6159021)
[»] chr2 (8 HSPs)
chr2 (161-240)||(37893008-37893087)
chr2 (162-224)||(22788001-22788063)
chr2 (161-235)||(18387240-18387314)
chr2 (162-235)||(8273245-8273318)
chr2 (162-223)||(19984720-19984781)
chr2 (161-213)||(5037298-5037350)
chr2 (162-235)||(12967270-12967344)
chr2 (162-218)||(20685006-20685062)
[»] chr6 (9 HSPs)
chr6 (161-235)||(35060900-35060974)
chr6 (162-235)||(14153354-14153427)
chr6 (258-319)||(807122-807183)
chr6 (161-237)||(31522538-31522614)
chr6 (162-236)||(23608427-23608501)
chr6 (162-242)||(14430944-14431024)
chr6 (162-243)||(14431471-14431552)
chr6 (162-235)||(17436546-17436619)
chr6 (309-360)||(806687-806739)
[»] chr8 (10 HSPs)
chr8 (160-221)||(37687331-37687392)
chr8 (160-237)||(43640976-43641053)
chr8 (162-240)||(23558983-23559061)
chr8 (162-234)||(35841397-35841469)
chr8 (160-235)||(33220792-33220867)
chr8 (160-207)||(9418585-9418632)
chr8 (159-218)||(33220021-33220079)
chr8 (161-235)||(31762240-31762314)
chr8 (162-235)||(5967242-5967315)
chr8 (163-224)||(9384617-9384678)
[»] chr4 (13 HSPs)
chr4 (162-241)||(27992303-27992382)
chr4 (161-235)||(33164510-33164584)
chr4 (162-240)||(38677662-38677740)
chr4 (162-240)||(36217870-36217948)
chr4 (162-235)||(36172165-36172238)
chr4 (162-213)||(37576543-37576594)
chr4 (162-240)||(38676939-38677017)
chr4 (165-235)||(24974151-24974221)
chr4 (160-218)||(40312816-40312874)
chr4 (160-218)||(40322892-40322950)
chr4 (162-240)||(54208180-54208258)
chr4 (162-223)||(54209066-54209127)
chr4 (159-187)||(628085-628113)
[»] chr7 (9 HSPs)
chr7 (162-236)||(26009369-26009443)
chr7 (162-235)||(38790884-38790958)
chr7 (258-307)||(149051-149100)
chr7 (156-240)||(26011953-26012037)
chr7 (162-217)||(42548161-42548216)
chr7 (162-223)||(28138759-28138820)
chr7 (165-235)||(5177-5247)
chr7 (192-240)||(30359733-30359781)
chr7 (160-220)||(41957586-41957646)
[»] scaffold1063 (1 HSPs)
scaffold1063 (161-235)||(1474-1548)
[»] scaffold0262 (1 HSPs)
scaffold0262 (162-241)||(8384-8463)
[»] scaffold1763 (1 HSPs)
scaffold1763 (162-240)||(364-442)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 6162893 - 6162687
Alignment:
29 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacgtctgcattaacccaattagcccaagttgtcaaaccacttct 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
6162893 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttct 6162794  T
129 gaaagcttccatacgatccatgtctttcactatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||| |||||||||  ||||| |||    
6162793 gaaagcttccatacgatccatgtctttcactatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgca 6162694  T
229 tgttaac 235  Q
    |||||||    
6162693 tgttaac 6162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 6137735 - 6137615
Alignment:
41 taggagaaattccttggaaaagaactttggttttgtttgtatcaacgtctgcattaacccaattagcccaagttgtcaaaccacttctgaaagcttccat 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
6137735 taggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccagttagcccaagttgtcaaaccagttctaaaagcttccat 6137636  T
141 acgatccatgtctttcactat 161  Q
    |||||||||||||||||||||    
6137635 acgatccatgtctttcactat 6137615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 6131944 - 6131812
Alignment:
29 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacgtctgcattaacccaattagcccaagttgtcaaaccacttct 128  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||  ||||||||| ||||||||||||||||||||| |||     
6131944 acttgtagtgcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctttattaacccagttagcccaagttgtcaaaccagttcg 6131845  T
129 gaaagcttccatacgatccatgtctttcactat 161  Q
     ||||||||||||||||||||||||||||||||    
6131844 aaaagcttccatacgatccatgtctttcactat 6131812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 13284738 - 13284870
Alignment:
29 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacgtctgcattaacccaattagcccaagttgtcaaaccacttct 128  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
13284738 acttgtagtgtacaggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccagttct 13284837  T
129 gaaagcttccatacgatccatgtctttcactat 161  Q
     |||||||||||| | ||||| |||||||||||    
13284838 aaaagcttccatatggtccatctctttcactat 13284870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 53782349 - 53782276
Alignment:
359 tttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtcaaatatacattactacacaagcaaca 432  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
53782349 tttctcttaaaaggcagcagcctggtccaatccaagtggggtgtggtcaaagatacattactatacaagcaaca 53782276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 339
Target Start/End: Complemental strand, 54529034 - 54528855
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcatgct 260  Q
    ||||||||||| ||||| ||||| || || |||||  ||| |||||||||||||||| |||||  |||||||||| ||||||| | || ||  |||  ||    
54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaactcacgcaacctgagttaattcacact 54528935  T
261 agtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacac-aaaagaaaaacacactaaaacccagcgtga 339  Q
    | ||||||||||  | ||||||| ||||| | ||||||||||||| ||| |||| ||||||| |||||||||||||||||    
54528934 aatgttaaatttgtgggagttaactcacgtttcatgacttaagtcgcacaaaaaaaaaaacaaactaaaacccagcgtga 54528855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 44833470 - 44833543
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||| |||||||||  ||||| |||| |||||    
44833470 gaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaac 44833543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 47064863 - 47064942
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    |||||| ||||||||||||||||| || || ||||| |||||||||| |||||||||   |||| |||||||||||||||    
47064863 tgaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaacttacg 47064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 53827742 - 53827666
Alignment:
159 tatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||| |||| ||   | ||||| ||||||||||||||||||||  ||||| ||||||||||    
53827742 tatgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaac 53827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 4969875 - 4969937
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 224  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||| ||| |||||| |||||    
4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaataccccta 4969937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 11342887 - 11342969
Alignment:
159 tatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    |||||||||||||||||   |||||||||  ||||||| |||||||||| ||||||||   ||||| ||||||||| ||||||    
11342887 tatgaattctgctcattgttcaaatggttccgttcattcccaaagtaaaagtccaaaaagcccctacgcatgttaatttacgc 11342969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 3539666 - 3539742
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    ||||||| ||||| ||| |||||||||| || ||||||||||| ||||||  ||||||| |||||  ||||||||||    
3539666 atgaattatgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaact 3539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 53814639 - 53814567
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 234  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  ||||||  ||||| |||||||||    
53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaa 53814567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 30533957 - 30533882
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    |||||||||||| |||| | || |||| || |||||| |||||||||| ||||||||| |||||  ||||||||||    
30533957 tgaattctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaatacccctacacatgttaact 30533882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 15040681 - 15040754
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| |  ||||  ||||| ||||||||||    
15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaac 15040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 44430418 - 44430463
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaa 207  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||    
44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 44836556 - 44836483
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||| | ||||||||  | ||||||| |||||||||||||| | |  ||||| ||||||||||    
44836556 gaattctgctcattatctaaatggttccgctcatttctaaagtaaatgtccatattgcccctacgcatgttaac 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
163 aattctgctcattacccaaatggttatgttcatttccaaagtaaa 207  Q
    |||||||||||||||||||||||||  | ||||| ||||||||||    
13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 340 - 447
Target Start/End: Complemental strand, 2094321 - 2094211
Alignment:
340 ttaacttacgctggttttgtttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtc--aaatatacattactacacaagcaacaacaa- 436  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||     
2094321 ttaactcacgctggttttgtttctcataaaagccagcagcctggtccaatccaagtggggtgtgatcaaaaatatacattactatacaagcaacaacaac 2094222  T
437 ccaagaataat 447  Q
    |||||||||||    
2094221 ccaagaataat 2094211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 2094441 - 2094366
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||| |||| ||||||    
2094441 tgaattctgctcattacccaaattgttctgctcatttccaaagtaaatgtctaaaatatccctacgcatattaact 2094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 11821158 - 11821238
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||||||||||||| ||||||||||  ||||||| |||||||||| |||||||||   ||||||||||||||||||||    
11821158 atgaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacg 11821238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 3792559 - 3792633
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||||||||| |||  | |||||||||||||||| |||||||||  || || ||||||||||    
3792559 tgaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaac 3792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 39650195 - 39650269
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||| ||||||||  | ||||| | ||||||||||||||||||  ||||| ||||||||||    
39650195 tgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaac 39650269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 37260991 - 37260911
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 242  Q
    ||||| ||||| ||||||||| |||| ||  ||||  |||||||||||||||||||  ||||||||||||||||| |||||    
37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaactcacgca 37260911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 42883831 - 42883751
Alignment:
163 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 243  Q
    |||| ||||| ||| | |||||||| || ||||||| ||| |||||||||||||||||||||  |||||||||| ||||||    
42883831 aattatgctctttagctaaatggttttgctcatttctaaaataaatgtccaaaatatccctacacatgttaactcacgcaa 42883751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 5602943 - 5602999
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 217  Q
    |||||||||||| |||||||||||| | || ||||| |||||||||||| |||||||    
5602943 tgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 5602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 35392183 - 35392108
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    |||| ||||||| |||||||||| ||| || ||||| ||||||||||||| |||||||   ||| |||||||||||    
35392183 tgaactctgctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaact 35392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 35391487 - 35391549
Alignment:
174 ttacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    ||||| ||||||||  ||||||| |||||||||||||||||||||  | || |||||||||||    
35391487 ttacctaaatggtttcgttcattcccaaagtaaatgtccaaaatactcatacgcatgttaact 35391549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 33617644 - 33617717
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||| |||||||||||||||||| |  | |||||  ||||||||||| || ||||  ||||||||||||||||    
33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaac 33617717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 49033808 - 49033755
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaa 215  Q
    |||||||||||||||  |||||||||  | ||||| ||||||||||||||||||    
49033808 gaattctgctcattattcaaatggttccgctcattcccaaagtaaatgtccaaa 49033755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 3792296 - 3792352
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    ||||||||||||||||||||||| || |  |||||  |||| |||||||||||||||    
3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaata 3792352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 332
Target Start/End: Complemental strand, 17644681 - 17644507
Alignment:
159 tatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcat 257  Q
    |||||||| ||||||||||| |||||| |  | ||||| ||||||||||||||||||||| ||||| ||||||||| | |||||| | ||| ||  |||     
17644681 tatgaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacgcaataaaagttaactcac 17644582  T
258 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaaccc 332  Q
    ||||||||||||||| | |||||||| ||||||||| |||||||| |||| || || ||  ||||||||||||||    
17644581 gctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaaccc 17644507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 7164274 - 7164355
Alignment:
258 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaacccagcgtga 339  Q
    |||| |||||||||| | ||||||||||||||| || ||||||||||||| || || ||| ||||||||||||||| |||||    
7164274 gctaatgttaaatttgcatgagttaattcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtga 7164355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 11135741 - 11135820
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    ||||| ||||| ||||||||||| ||  | ||||||||||| |||||| |||||||| ||||| ||||||||||||||||    
11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgc 11135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 6636980 - 6636919
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 223  Q
    ||||||||||||||| |||||||  |||||||||| ||||| |||||| |||||||||||||    
6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 339
Target Start/End: Complemental strand, 1145886 - 1145776
Alignment:
230 gttaacttacgcaacataagt-atgtcatgctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaa 328  Q
    |||||||||||| |||| ||| |  ||| |||| ||| |||||| | |||||||| ||||||||| || |||||||||| || || ||| |||||| |||    
1145886 gttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcacgctgcgtgtcttaagtcacgcagaaaaaatacacaccaaa 1145787  T
329 acccagcgtga 339  Q
    |||||||||||    
1145786 acccagcgtga 1145776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 3458013 - 3458070
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    |||||||||||||||||| |||  ||  || |||||||||||||||||||||||||||    
3458013 tgaattctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaata 3458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 25787920 - 25787864
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 217  Q
    |||||||||||| ||| ||||| ||||||| ||||||||||| |||||| |||||||    
25787920 tgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaat 25787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 30491869 - 30491798
Alignment:
166 tctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 237  Q
    |||||||||||||||||||  |  | ||||| |||||||||| ||| ||||| |||||| ||||||||||||    
30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaactt 30491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 34017698 - 34017635
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 224  Q
    ||||||||||||||||| |||||||||  | |||||| ||||||||||| || ||||| |||||    
34017698 tgaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaataccccta 34017635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 36580219 - 36580298
Alignment:
158 ctatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 237  Q
    ||||||||||||||||||||  ||||||||  | | ||||| ||| |||| || |||||||||||||  |||||||||||    
36580219 ctatgaattctgctcattacttaaatggttccgcttatttctaaaataaaagttcaaaatatccctacacatgttaactt 36580298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 25760591 - 25760509
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaac 244  Q
    ||||||||||| ||||||||| ||||||| || || | ||||||||||  |||||||||||| ||   ||||||| |||||||    
25760591 gaattctgctctttacccaaacggttatgctcgttccaaaagtaaatgatcaaaatatccctgtgtgagttaactcacgcaac 25760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 3759632 - 3759583
Alignment:
192 tcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    ||||||||||| |||||| |||||||| |||||| |||||||||| ||||    
3759632 tcatttccaaaataaatgaccaaaataaccctattcatgttaactcacgc 3759583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 40266588 - 40266539
Alignment:
258 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 307  Q
    |||| |||||||||| |||||||||| ||||||| | |||||||||||||    
40266588 gctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcac 40266539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 6159021 - 6158942
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    |||||||||||||||||  |||||| |  | ||||| |||||||||||||| |||||| ||||| | ||||||||| ||||    
6159021 tgaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaata-ccctacgtatgttaactcacgc 6158942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 37893087 - 37893008
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||  |||||||||||||||||||||    
37893087 tgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacg 37893008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 22788063 - 22788001
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 224  Q
    ||||||||||| |||||||||||| | |||||||| |||||||||||| |||||||| |||||    
22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaataccccta 22788001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 18387240 - 18387314
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||| ||||||||| || ||||| ||||||||||| || |||||  || || ||||||||||    
18387240 tgaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaac 18387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 8273245 - 8273318
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 8273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 19984781 - 19984720
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 223  Q
    ||||||||||| ||||||||| ||||||| || |||| |||||||||| |||||||| ||||    
19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccct 19984720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 5037298 - 5037350
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 213  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||    
5037298 tgaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtcca 5037350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 12967270 - 12967344
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagt-aaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||| ||||||||  | |||||  |||||| ||| |||||||||| ||||| ||||||||||    
12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaac 12967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 20685006 - 20685062
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    ||||||||||||||||||||||||||  | |||||  ||||||||| ||| ||||||    
20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaata 20685062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 35060974 - 35060900
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||  ||||| ||||||||||    
35060974 tgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaac 35060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 14153354 - 14153427
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||| |||||||| ||||| ||||||||||    
14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 807183 - 807122
Alignment:
258 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaa 319  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||||||||| ||||| |||||    
807183 gctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaaaa 807122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 31522614 - 31522538
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 237  Q
    |||||||||||||||||||||||||||  | ||||| |||||||||||| || ||||  ||||| ||| ||||||||    
31522614 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaactt 31522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 23608427 - 23608501
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    |||||||||||||||  |||||| ||  ||||||| ||||| |||| ||| |||||||||||| |||||||||||    
23608427 gaattctgctcattattcaaatgattccgttcattcccaaaataaaagtctaaaatatccctacgcatgttaact 23608501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 14430944 - 14431024
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 242  Q
    ||||||||||  ||||| ||| |||| || ||||||| |||||||||||  ||||| |||||| ||||||||||| |||||    
14430944 gaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaactcacgca 14431024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 14431552 - 14431471
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 243  Q
    ||||||| ||| |||| |||| |||| |||||||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
14431552 gaattctactctttacacaaacggttttgttcattcctaaagtaaatgttcaaaacatccctacatatgttaactcacgcaa 14431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 17436619 - 17436546
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||| |  | || || |||||||||||| || |||| ||||||  |||||||||    
17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 806687 - 806739
Alignment:
309 caaaagaaaaacacactaaaacccagcgtga-ttaacttacgctggttttgtt 360  Q
    ||||| ||||||||||| ||||||| ||||| |||||| ||||||||||||||    
806687 caaaaaaaaaacacactgaaacccaacgtgagttaactcacgctggttttgtt 806739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 37687392 - 37687331
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcc 221  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||||||    
37687392 atgaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaatatcc 37687331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 43641053 - 43640976
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 237  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||  |||| |  ||||| ||||||||||||    
43641053 atgaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaactt 43640976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 23559061 - 23558983
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||||||||||| ||||||||||  | ||||| |||| ||||| |||||||||  ||||| |||||||||||||||    
23559061 gaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacg 23558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 35841397 - 35841469
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 234  Q
    ||||||||||| ||||| |||  ||| || ||||||  ||||||||||||||||||||||||| |||||||||    
35841397 gaattctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaatatccctacgcatgttaa 35841469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 33220867 - 33220792
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||||||||||||||    ||||| |||||||||| || ||||||  ||||| ||||||||||    
33220867 atgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 33220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 9418585 - 9418632
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaa 207  Q
    ||||||||||||||||||||||||||||  | ||||| ||||||||||    
9418585 atgaattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 33220021 - 33220079
Alignment:
159 tatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    |||||||||||||||||| ||||||||||  | ||| ||||||||||||||| |||||||    
33220021 tatgaattctgctcattatccaaatggttccgctca-ttccaaagtaaatgttcaaaata 33220079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 31762240 - 31762314
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||  ||||||| |  | ||||| |||||||||||   | ||||||||||||||||||||||    
31762240 tgaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaac 31762314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 5967315 - 5967242
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  | ||||  ||||| ||||||||||    
5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaac 5967242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 9384617 - 9384678
Alignment:
163 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 224  Q
    ||||||||||||||  |||||||||  | |||||| |||| |||||||||||||| ||||||    
9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaatgtccaaaatgtcccta 9384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 27992382 - 27992303
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    ||||| || ||||||||||||||| | || ||||||| ||| ||||||||||||||| ||||||||||||||||| ||||    
27992382 gaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaactcacgc 27992303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 33164584 - 33164510
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||||||  | |||||  |||||||||||||||||||  ||||| ||||||||||    
33164584 tgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaac 33164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 38677740 - 38677662
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||||||| ||||||||| | || |||||||| ||||||||||| | ||||||||||||  |||||||||||||||    
38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaacttacg 38677662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 36217870 - 36217948
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||||||| |||| ||||||||| |  ||||| |||||||||| |||||||||  ||||| |||||||||||||||    
36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacttacg 36217948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 36172165 - 36172238
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||| |||    ||||| |||||||||| |||||||||| ||||||| ||||||||    
36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaac 36172238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 37576543 - 37576594
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 213  Q
    ||||||||||||||||||||| |||| || || |||||||||||||||||||    
37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtcca 37576594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 38676939 - 38677017
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||||| ||| ||| ||||| |||| || ||||| ||||| ||||||||||||||| | ||| |||||||||||||||    
38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaacttacg 38677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 24974221 - 24974151
Alignment:
165 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||| |||||||| | || ||||| |||||||||||| || ||||  ||||| ||||||||||    
24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 24974151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 40312874 - 40312816
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    |||| |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
40312874 atgatttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 40322950 - 40322892
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 218  Q
    |||| |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
40322950 atgatttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 54208180 - 54208258
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||| ||||| ||| |||||||||| || ||||| ||||||||||||  ||||||| |||||  || |||||||||||    
54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacg 54208258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 54209127 - 54209066
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 223  Q
    ||||||||||| ||| | ||| ||||||||||||| ||||||||||||| || | |||||||    
54209127 gaattctgctctttatctaaacggttatgttcattcccaaagtaaatgttcatattatccct 54209066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 628085 - 628113
Alignment:
159 tatgaattctgctcattacccaaatggtt 187  Q
    |||||||||||||||||||||||||||||    
628085 tatgaattctgctcattacccaaatggtt 628113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 26009369 - 26009443
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 236  Q
    ||||||||||| ||||||||| | || || ||||| |||||||||||| ||||||||| |||| |||||||||||    
26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaact 26009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 38790884 - 38790958
Alignment:
162 gaattctgctcattacccaaatggttatgttcattt-ccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||| ||||||||||  | |||||| |||||||||| |||||||||| ||||| ||||||||||    
38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaac 38790958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 149051 - 149100
Alignment:
258 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 307  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||    
149051 gctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcac 149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 26012037 - 26011953
Alignment:
156 cactatgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||| ||||||||||| ||||||||| | || |  |||||  ||||||||||| |||||||| | |||||||||||||||||||    
26012037 cactaagaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaacttacg 26011953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 42548161 - 42548216
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 217  Q
    |||||||||||||||||||||| ||| || ||||| |||||||||| |||||||||    
42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 223  Q
    ||||||||||| ||||||||||| || || ||||| |||||||||||| |||||||| ||||    
28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 5247 - 5177
Alignment:
165 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    ||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30359733 - 30359781
Alignment:
192 tcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||| |||||||||| ||||||||  ||||||||| ||||||||||||    
30359733 tcattcccaaagtaaaagtccaaaacgtccctatgcttgttaacttacg 30359781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 41957646 - 41957586
Alignment:
160 atgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatc 220  Q
    ||||||| ||||| ||||||||| | || || ||||| |||||||||||| ||||||||||    
41957646 atgaattttgctctttacccaaacgattttgatcattcccaaagtaaatgaccaaaatatc 41957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 1474 - 1548
Alignment:
161 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 235  Q
    |||||||||||||||||||||||||||  | ||||||  |||||||| |||||||||  ||||  ||||||||||    
1474 tgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaac 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 8384 - 8463
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 241  Q
    ||||||||||| ||||||||| | || || ||||||| |||||||||||  |||||| || || ||||||||||| ||||    
8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaactcacgc 8463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 442 - 364
Alignment:
162 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 240  Q
    ||||| ||||| ||||||||||||||  | ||||| ||||||||||  ||| ||||  || ||||||||||||||||||    
442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaacttacg 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1154 times since January 2019
Visitors: 6711