View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0916_low_8 (Length: 497)

Name: NF0916_low_8
Description: NF0916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0916_low_8
NF0916_low_8
[»] chr4 (10 HSPs)
chr4 (30-497)||(547197-547664)
chr4 (38-411)||(3438009-3438381)
chr4 (55-497)||(55908104-55908543)
chr4 (250-411)||(53761356-53761517)
chr4 (242-411)||(6006698-6006867)
chr4 (321-497)||(641196-641371)
chr4 (287-493)||(1527808-1528014)
chr4 (373-491)||(10634128-10634246)
chr4 (433-491)||(8183780-8183838)
chr4 (443-491)||(532473-532521)
[»] chr8 (5 HSPs)
chr8 (38-497)||(17627415-17627874)
chr8 (435-497)||(17636150-17636212)
chr8 (234-312)||(5767216-5767294)
chr8 (234-312)||(14003510-14003588)
chr8 (440-497)||(17643355-17643412)
[»] chr1 (5 HSPs)
chr1 (165-492)||(19467991-19468312)
chr1 (295-491)||(33160794-33160990)
chr1 (432-491)||(9581358-9581417)
chr1 (124-282)||(17352140-17352298)
chr1 (437-491)||(9586926-9586980)
[»] chr2 (2 HSPs)
chr2 (55-497)||(1037040-1037479)
chr2 (433-497)||(32785526-32785590)
[»] chr6 (9 HSPs)
chr6 (302-491)||(7993805-7993994)
chr6 (361-491)||(6594285-6594418)
chr6 (293-411)||(19632785-19632903)
chr6 (295-447)||(6596562-6596714)
chr6 (346-497)||(6410287-6410438)
chr6 (290-497)||(6602816-6603023)
chr6 (275-335)||(8913665-8913725)
chr6 (346-448)||(7131947-7132049)
chr6 (357-411)||(10579433-10579487)
[»] chr7 (4 HSPs)
chr7 (295-497)||(10169752-10169948)
chr7 (295-497)||(10177277-10177473)
chr7 (379-497)||(10167380-10167492)
chr7 (53-98)||(10615270-10615315)
[»] scaffold0262 (1 HSPs)
scaffold0262 (292-418)||(280-406)
[»] chr5 (5 HSPs)
chr5 (186-316)||(41889058-41889188)
chr5 (82-316)||(41900938-41901172)
chr5 (298-411)||(20477701-20477814)
chr5 (386-487)||(32267766-32267867)
chr5 (123-326)||(32267927-32268130)
[»] chr3 (3 HSPs)
chr3 (53-252)||(13470109-13470311)
chr3 (346-497)||(514392-514543)
chr3 (435-494)||(51113537-51113596)
[»] scaffold0345 (1 HSPs)
scaffold0345 (433-491)||(6808-6866)
[»] scaffold0105 (6 HSPs)
scaffold0105 (433-491)||(731-789)
scaffold0105 (433-491)||(2122-2180)
scaffold0105 (433-491)||(6908-6966)
scaffold0105 (433-491)||(14273-14331)
scaffold0105 (433-491)||(32113-32171)
scaffold0105 (433-491)||(50511-50569)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 547664 - 547197
Alignment:
Q  30 aaggcatgacattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547664 aaggcatgacattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctc 547565  T
Q  130 tcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgcc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547564 tcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgcc 547465  T
Q  230 aacatatccaacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaacct 329  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547464 aacatatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaacct 547365  T
Q  330 tagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547364 tagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatg 547265  T
Q  430 gagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547264 gagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 547197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 38 - 411
Target Start/End: Original strand, 3438009 - 3438381
Alignment:
Q  38 acattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctat 137  Q
    |||||| ||| ||| | ||||||| |||| || || ||||||| |||||||||||||||||   ||||||| ||||| |||||   || || ||||||||    
T  3438009 acattaattcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatgtatcccggatgaattactttcctctat 3438108  T
Q  138 tgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatc 237  Q
    |||||| | || | |||||||||||| |||||||||||| |||||   ||||||||||||||||| ||| | || | | || |||||||| |||  |||     
T  3438109 tgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtcaatgtata 3438208  T
Q  238 caacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagt 337  Q
    |||||||| |||||||||||  || | ||| | | | |||  |||||| |  | |||||  |||||| ||||||||||| || ||||||||||||| | |    
T  3438209 caacatttggatcttcaaaa-acttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgatttggtgtctataaaccttagtgatt 3438307  T
Q  338 gtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 411  Q
    ||  |   |||||||| |||||||| ||| ||||| ||||||||||| |||||||||||||||| |||||||||    
T  3438308 gttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtgagataaaaatggaa 3438381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 55 - 497
Target Start/End: Original strand, 55908104 - 55908543
Alignment:
Q  55 attgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattc 154  Q
    |||| ||||||| || ||||||| ||||||||||||||| ||||   |||||  || |||||||||   ||||| |  ||||||||||||| || | |||    
T  55908104 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc 55908203  T
Q  155 ctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttca 254  Q
    |||||||||  |||||||||||||||||   |||||||| ||||| ||||||||  | ||| || ||||||||    | ||| |||||||| ||||||||    
T  55908204 ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtg---tcgtatacaacatttggatcttca 55908300  T
Q  255 aaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaat 354  Q
    ||||||    ||| ||| | ||||  ||||    || ||||||||||||||||||||||||| || ||||||||||||| | ||| |    |||||| |     
T  55908301 aaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagac 55908400  T
Q  355 ttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctt 454  Q
    |  ||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||| |||||   | |||    |||||||||| |||||||||| ||    
T  55908401 tcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattttt 55908500  T
Q  455 tcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
      | ||||| |||| ||| || |||||| ||||| ||||||||    
T  55908501 cgatggattgtgttttaaaccatcaattaaagtcactccattt 55908543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 411
Target Start/End: Original strand, 53761356 - 53761517
Alignment:
Q  250 cttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactca 349  Q
    |||||||||||| ||||| |||  |||||||||||| |  | ||||||||| ||||||||||||||| ||  |||||||||||||  |||    |  |||    
T  53761356 cttcaaaatgcttattttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatca 53761455  T
Q  350 caaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 411  Q
    |||| || |||||||||||||| | ||  || ||| ||||||||||||||||||||||||||    
T  53761456 caaaattggccttgtttgcacttgctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 411
Target Start/End: Complemental strand, 6006867 - 6006698
Alignment:
Q  242 atttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgg 341  Q
    |||| |||||||||| |||||||||| ||| | ||  ||| || ||| | ||||||  |||||||| |||||||| |||||||||  ||||| | ||||     
T  6006867 atttggatcttcaaagtgctgattttctgaatgattcacacgtccttaagttgtctcggtttcttgctgatttggtgtttataaatattagtaaatgtga 6006768  T
Q  342 gcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 411  Q
        ||||||||||||||||||||||||||| |||| || |||| |  |||||||||| ||| |||||||    
T  6006767 tagcctcacaaatttagccttgtttgcactccttaggaactgtgataaacttagtgaggtcataatggaa 6006698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 497
Target Start/End: Complemental strand, 641371 - 641196
Alignment:
Q  321 tataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaa 420  Q
    ||||||||||||||| |||||  | |||||||| | | ||||||||||||| | | | |||||| ||||||||| ||| || |||||||||  |||        
T  641371 tataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcacttgctggaaattgtccttcacttaatgatattaaaatggaatacacgctt 641272  T
Q  421 attgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    ||||| |  ||||||| |||||| |||||||||||||  |||||||||||| ||| ||| || |||| |||||||||    
T  641271 attggaaaagagagtgcagagaa-tctaattctttcatagattttgttgtacgccgtcagttaaagtgtctccattt 641196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 493
Target Start/End: Original strand, 1527808 - 1528014
Alignment:
Q  287 ttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgc 386  Q
    |||| ||||||| ||||||| ||||||||  || ||||||| ||||| | ||||     |||||| |||||||||||||||||||| |||  |||||||     
T  1527808 ttgagttgtcttcgtttcttagtgatttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactccttaagaattgtgt 1527907  T
Q  387 ttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaag 486  Q
       ||| |||||  |||||||||||  |||||  |||||||    ||| |||||||| ||| || | || | |||||||| ||||  |||||||||||||    
T  1527908 gaaactaagtgacgtcaaaatggaatacacaactattgggaaaatgagcgtagagaactcttataccttgatggattttgatgtataccctcaattgaag 1528007  T
Q  487 tctctcc 493  Q
    |||||||    
T  1528008 tctctcc 1528014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 491
Target Start/End: Original strand, 10634128 - 10634246
Alignment:
Q  373 gttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaa 472  Q
    ||||| || ||| ||||||||||||||||||||||||||  |||    |||||||   ||| | | ||||||||||||||||| | ||||||||||| ||    
T  10634128 gttagaaactgtccttcacttagtgagatcaaaatggaatgcacgtctattgggaaaaagaatttcgagaattctaattctttgagggattttgttggaa 10634227  T
Q  473 gccctcaattgaagtctct 491  Q
    | |||||| | ||||||||    
T  10634228 gacctcaacttaagtctct 10634246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 8183780 - 8183838
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  8183780 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 8183838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 532521 - 532473
Alignment:
Q  443 attctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||||||||| | ||||| || ||||||||    
T  532521 attctaattctttgaaggattttgttgtacggcctcagttaaagtctct 532473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 38 - 497
Target Start/End: Original strand, 17627415 - 17627874
Alignment:
Q  38 acattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctat 137  Q
    |||| ||||| ||| ||| ||||||| || || ||||||| || |||||   ||||||||| | || ||  || ||||| |||||||| ||||| |||||    
T  17627415 acatcagttcacactttactgactcgctggtgagtttgaaagggttaacaaatcttgatttgccgtttttgcgcatctcagatatgttcctctcttctat 17627514  T
Q  138 tgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatc 237  Q
    |||||| |||| |||| ||||||||| ||||||||||  | ||||  |   |||||||||| ||||||||| || ||| || |||| ||| |||  ||||    
T  17627515 tgcaattgaagttatttctttgagaaggcttgtcctcagagattgcattaactatagttattctggaatattttctttgttatccatgtgtcaatgtatc 17627614  T
Q  238 caacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagt 337  Q
    |||||||| ||||||||  ||||| ||||||||| |||||||||| || |||| |||||||  ||||||||| |||||| || | ||||||||||| | |    
T  17627615 caacatttggatcttcagtatgcttattttttgaataatcaacatatttttgagttgtcttcatttcttggtaatttggtgtctgtaaaccttagttatt 17627714  T
Q  338 gtgggcaactc-acaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtg 436  Q
    || ||   ||| || || | |||||||||| ||||||||||||| ||| ||||||||| |||||| |||||||||  ||||   ||||||   ||||||     
T  17627715 gtcggatgctcgacgaa-tcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcacatctattggggaagagagtc 17627813  T
Q  437 tagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    || ||||||||||||||||   |||||| ||||||||||||||||| || |||||| ||||    
T  17627814 taaagaattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctattt 17627874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 497
Target Start/End: Original strand, 17636150 - 17636212
Alignment:
Q  435 tgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    ||||||||||||||||||||  | | |||||||||||| ||||||||| ||||||||||||||    
T  17636150 tgtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccattt 17636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 5767216 - 5767294
Alignment:
Q  234 tatccaacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 312  Q
    |||||||||||| ||||||||| || |||||||||||| | ||||   ||||  ||| |||||||||||||||||||||    
T  5767216 tatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 5767294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 14003588 - 14003510
Alignment:
Q  234 tatccaacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 312  Q
    |||||||||||| ||||||||| ||||||||||||||| | ||||   || |  ||| |||||||||||||||||||||    
T  14003588 tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttggtgat 14003510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 17643355 - 17643412
Alignment:
Q  440 agaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    |||||||||||||||| | | ||||  || ||||||||||||| ||||||||||||||    
T  17643355 agaattctaattctttgatgaatttcattctaagccctcaatttaagtctctccattt 17643412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 492
Target Start/End: Original strand, 19467991 - 19468312
Alignment:
Q  165 gcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctgat 264  Q
    |||||||||| || |||| || ||| |||| ||||||||||| | |||||| || ||||||||   |  | | |||||||| |||||||||  |||||      
T  19467991 gcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaagtgtgcaggtttgcaacatttggatcttcaacgtgctggg 19468090  T
Q  265 tttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgt 364  Q
    ||||||| | ||||  |||||  | | ||||||||||||||||||||||| | || ||||||||||||| | |||  | | |||||| ||| | ||||||    
T  19468091 tttttgaatgatcactatgttgataagttgtctttgtttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgt 19468190  T
Q  365 ttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattt 464  Q
    || |||||||||| |||||| |||||||||||||||||||||||||      ||| |||||||   ||||||||||||||||| |||||||   ||||||    
T  19468191 ttacactcgttaggaattgtccttcacttagtgagatcaaaatgga------aaatattgggagtaagagtgtagagaattctgattctttgccggattt 19468284  T
Q  465 tgttgtaagccctcaattgaagtctctc 492  Q
    || ||||  ||||||||| |||| ||||    
T  19468285 tggtgtattccctcaattaaagtatctc 19468312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 491
Target Start/End: Complemental strand, 33160990 - 33160794
Alignment:
Q  295 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 394  Q
    ||||||||||||| || ||||| || ||||||||||| |   ||| ||   |||||| | | ||| |||||| |||| ||||  || ||| |||||||||    
T  33160990 tctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcactta 33160891  T
Q  395 gtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    |||| ||||||||||||  |||||  |||||||  |||||| ||||| ||  ||||||||| | ||| ||||  |||||||||||||| ||||||||    
T  33160890 gtgacatcaaaatggaatgcacaactattgggaaagagagtatagagcatgataattctttgacggactttgaagtaagccctcaattaaagtctct 33160794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Complemental strand, 9581417 - 9581358
Alignment:
Q  432 gagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    |||||| ||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||    
T  9581417 gagtgtcgagaattctaagtctttcaaggatattggtgtaagccctcaattaaagtctct 9581358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 17352298 - 17352140
Alignment:
Q  124 ttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtcca 223  Q
    ||||||||||||||||||| ||| | | ||||||| || |  |||||||| ||| |||     ||||| |||||||||||||  | || ||| || ||||    
T  17352298 ttgctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatcca 17352199  T
Q  224 agtgccaacatatccaacatttagatcttcaaaatgctgattttttgactaatcaacat 282  Q
    ||||||||| |||||||||||  |||||||||| ||||| |||| ||| | ||||||||    
T  17352198 agtgccaacgtatccaacattaggatcttcaaactgctggttttctgagtgatcaacat 17352140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 9586980 - 9586926
Alignment:
Q  437 tagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| | ||| |||||| |||||||||| |||||||||||||||||    
T  9586980 tagagaattctaaatttttgaaggatattgttgtaagacctcaattgaagtctct 9586926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 55 - 497
Target Start/End: Original strand, 1037040 - 1037479
Alignment:
Q  55 attgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattc 154  Q
    |||| ||||||| || ||||||| ||||||||||||||| ||||    ||||  || || ||||||   ||||| |  ||||||||||||| || | |||    
T  1037040 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttc 1037139  T
Q  155 ctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttca 254  Q
    |||||||||  |||||||||||||||||   | |||||| ||||| ||||||||  | ||| || |||||||| |    ||| |||||||| ||||||||    
T  1037140 ctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaagtgtcg---tatacaacatttggatcttca 1037236  T
Q  255 aaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaat 354  Q
    ||||||    ||| ||| | ||||  ||||    || ||||||||||||||||||||||||| || ||||||||||||| | ||| |    |||||| |     
T  1037237 aaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagac 1037336  T
Q  355 ttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctt 454  Q
    |  ||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||| |||||   | |||    |||||||||| |||||||||||||    
T  1037337 tcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattctt 1037436  T
Q  455 tcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
      | ||||| |||| ||| || |||||| ||||| ||||||||    
T  1037437 cgatggattgtgttttaaaccatcaattaaagtcactccattt 1037479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 32785526 - 32785590
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    |||||| | |||||||||||||| | |||||||||||||| ||||||||| |||| |||||||||    
T  32785526 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccattt 32785590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 491
Target Start/End: Original strand, 7993805 - 7993994
Alignment:
Q  302 ttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagat 401  Q
    ||||||||||||||| || ||||||||||||| | ||| ||   |||||| | | |||||||||| |||||||||| || ||| | |||||| |||| ||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 7993904  T
Q  402 caaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  || | |||||||  |  |||||||||||||||||||||    
T  7993905 caaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttgacggattttcctccaagccctcaattgaagtctct 7993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 491
Target Start/End: Original strand, 6594285 - 6594418
Alignment:
Q  361 ttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaagg 460  Q
    |||||| |||| ||||| | |||| ||| ||||||||| ||||||||||| | |||||| || |||| |||||||| || || |||||||||||| | ||    
T  6594285 ttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggagagtgcagtgagttctaattctttgaggg 6594384  T
Q  461 att---ttgttgtaagccctcaattgaagtctct 491  Q
    |||   ||||||||| ||||||||||||||||||    
T  6594385 atttcgttgttgtaaaccctcaattgaagtctct 6594418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 19632903 - 19632785
Alignment:
Q  293 tgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcact 392  Q
    |||||||||| | | ||||||||| || ||| ||||||| | | ||| || | |||||| | ||| | |||||| | ||||||||||||||| |||||||    
T  19632903 tgtctttgttgcatagtgatttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcact 19632804  T
Q  393 tagtgagatcaaaatggaa 411  Q
    |||||||||||||||||||    
T  19632803 tagtgagatcaaaatggaa 19632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 447
Target Start/End: Original strand, 6596562 - 6596714
Alignment:
Q  295 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 394  Q
    ||||||||||||||||||||||  | ||||||||||| ||| |||      |||||| | | |||| ||||| | ||||| || |||||| |||| ||||    
T  6596562 tctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttttccctcgtaagaaattgtccttcgctta 6596661  T
Q  395 gtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattct 447  Q
    |||||||||||||| ||  ||||   ||||||| |||||||||||||||||||    
T  6596662 gtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaattct 6596714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 497
Target Start/End: Complemental strand, 6410438 - 6410287
Alignment:
Q  346 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 445  Q
    |||||| | ||||||  |||| |||||||||| |||||| ||||||||| ||||||||||||| ||   ||||  |||||||  |||||||||| | |||    
T  6410438 ctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtagggcatt 6410339  T
Q  446 ctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    ||||||||||    || |||| ||||  ||||||||| ||||||||| ||||    
T  6410338 ctaattctttggttgagtttggtgtataccctcaattaaagtctctctattt 6410287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 497
Target Start/End: Original strand, 6602816 - 6603023
Alignment:
Q  290 acttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttc 389  Q
    |||| ||||||||||||  | |||||| || ||||||||||||| | |||    | |||||| | ||| |||||||| |||| ||||  || ||| ||||    
T  6602816 acttttctttgtttcttactaatttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcacttgttaaaaactgtccttc 6602915  T
Q  390 acttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtct 489  Q
    ||||||||||||||||||||||  |||| | |||||||  |||| ||||||||||  | ||||| | | |||| ||| | ||  ||||||||| ||||||    
T  6602916 acttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaataatgattctatgatggatattggtatataccctcaattaaagtct 6603015  T
Q  490 ctccattt 497  Q
    ||| ||||    
T  6603016 ctctattt 6603023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 8913665 - 8913725
Alignment:
Q  275 atcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtca 335  Q
    ||||||||||| |  | |||||||||||||||||| |||||| || |||||||||||||||    
T  8913665 atcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagtca 8913725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 448
Target Start/End: Complemental strand, 7132049 - 7131947
Alignment:
Q  346 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 445  Q
    |||||| | |||||||||| | |||||||||| || ||  |||||||||||||| |||||||||||  ||||   || ||||  |||||||||| |||||    
T  7132049 ctcacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaatacacagctatagggaaagagagtgtagggaatt 7131950  T
Q  446 cta 448  Q
    |||    
T  7131949 cta 7131947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 10579433 - 10579487
Alignment:
Q  357 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 411  Q
    |||||||||| | ||||| || |||||| |||| |||||||||||||||||||||    
T  10579433 agccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 497
Target Start/End: Original strand, 10169752 - 10169948
Alignment:
Q  295 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 394  Q
    ||||||||| |||||||||| | || | ||||||||||||| |||  | |  ||||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  10169752 tctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcactta 10169851  T
Q  395 gtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctcca 494  Q
    ||||||||||||||||      ||| || ||||   ||||| |||| |||||| |||||||   |||||||| ||||  ||||||||||||||||||| |    
T  10169852 gtgagatcaaaatgga------aaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagtctctcta 10169945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 497
Target Start/End: Original strand, 10177277 - 10177473
Alignment:
Q  295 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 394  Q
    ||||||||| |||||||||| | || | ||||||||||||| |||  | |  ||||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  10177277 tctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcactta 10177376  T
Q  395 gtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctcca 494  Q
    ||||||||||||||||      ||| || ||||   ||||| |||| |||||| |||||||   |||||||| ||||  ||||||||||||||||||| |    
T  10177377 gtgagatcaaaatgga------aaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagtctctcta 10177470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 497
Target Start/End: Original strand, 10167380 - 10167492
Alignment:
Q  379 aattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctc 478  Q
    |||||| |||||||||||||||||||||||||      ||| || ||||   ||||| |||| |||||| |||||||   |||||||| ||||  |||||    
T  10167380 aattgtccttcacttagtgagatcaaaatgga------aaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctc 10167473  T
Q  479 aattgaagtctctccattt 497  Q
    |||||||||||||| ||||    
T  10167474 aattgaagtctctctattt 10167492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 10615315 - 10615270
Alignment:
Q  53 ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt 98  Q
    |||||||||| ||| || ||||||||||||| ||||||||||||||    
T  10615315 ttattgactcattggtgagtttgaagggcttgacttgtcttgattt 10615270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 418
Target Start/End: Complemental strand, 406 - 280
Alignment:
Q  292 ttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcac 391  Q
    ||||||||||||||||| ||||||| || |||||| |||||| | ||| |    |||||| | | | || |||||||||||||||| |||| | ||||||    
T  406 ttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactcgttaggaattatccttcac 307  T
Q  392 ttagtgagatcaaaatggaactcacaa 418  Q
    ||| ||||||||||||||||| |||||    
T  306 ttattgagatcaaaatggaacacacaa 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 41889058 - 41889188
Alignment:
Q  186 cggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctgattttttgactaatcaacatgtt 285  Q
    ||||| ||||||||||||||| | ||||||  | ||||||||  |||||||||||| ||| ||||||||||||  || |||| ||| | || ||||||||    
T  41889058 cggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaatattgtttttctgaatcataaacatgtt 41889157  T
Q  286 cttgacttgtctttgtttcttggtgatttgg 316  Q
     | || |||||||  ||||||||||||||||    
T  41889158 gtggagttgtcttcatttcttggtgatttgg 41889188  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 316
Target Start/End: Original strand, 41900938 - 41901172
Alignment:
Q  82 ttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaatt 181  Q
    ||||||| |||||||||   ||||||   |||||| ||| |||| |||  ||||||||||||  ||| | | |||||||  | |||||| ||||||||||    
T  41900938 ttaacttctcttgatttattgtcttccaatatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaatt 41901037  T
Q  182 gtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctgattttttgactaatcaaca 281  Q
    |   ||| ||||||||| |||||||   ||||||  |||||||||| |||||| |  ||||||| |||||| ||||||||| |||| | |   || ||||    
T  41901038 gcaccggttatagttattctggaattatttgtttactgtccaagtgtcaacatttaaaacatttggatcttgaaaatgctgtttttctcaaagatgaaca 41901137  T
Q  282 tgttcttgacttgtctttgtttcttggtgatttgg 316  Q
    |||| | ||  |||||| |||||||||||||||||    
T  41901138 tgttgtggagatgtcttcgtttcttggtgatttgg 41901172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 411
Target Start/End: Original strand, 20477701 - 20477814
Alignment:
Q  298 ttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtg 397  Q
    ||||||||||  ||||||| || |||||| |||||| | |||  ||| |||||| | |||||||||| | |||| ||||| || ||| |||||||| |||    
T  20477701 ttgtttcttgcggatttggtgtctataaatcttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 20477800  T
Q  398 agatcaaaatggaa 411  Q
    ||||||||||||||    
T  20477801 agatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 487
Target Start/End: Complemental strand, 32267867 - 32267766
Alignment:
Q  386 cttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaa 485  Q
    ||||||||||||||||||||||||||| ||||   |||||||   ||||| |||||| |||||| ||||| | |||||||||||   |||||||||| ||    
T  32267867 cttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgttgcttgccctcaattaaa 32267768  T
Q  486 gt 487  Q
    ||    
T  32267767 gt 32267766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 32268130 - 32267927
Alignment:
Q  123 gttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtcc 222  Q
    |||||||||||||||||||    ||  | |||||||||  | |||||| |||||| ||||   ||||||||| ||| |||||||   || |||  | |||    
T  32268130 gttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattctggaatcctttctttactatcc 32268031  T
Q  223 aagtgccaacatatccaacatttagatcttcaaaatgctgattttttgactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagttta 322  Q
    ||||| |||||| ||||||| || |||||||||||||||| |||| |||   || | |||||| | ||  |||||| |||||||| ||||||||| | ||    
T  32268030 aagtgtcaacatttccaacacttggatcttcaaaatgctgtttttctgaaagatgatcatgttgtggagatgtcttcgtttcttgttgatttggaatcta 32267931  T
Q  323 taaa 326  Q
    ||||    
T  32267930 taaa 32267927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 13470109 - 13470311
Alignment:
Q  53 ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctat 152  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||||| || |     ||||||  |||  ||| ||| || |||||||| ||||| | |    
T  13470109 ttattgactctatcatgagtttgaagggcttaacttgtcttgattttcagtttatgaatatctcaaataacttgttctactgtattgcaagggaaggtct 13470208  T
Q  153 tcctttgagaaagcttgtcctccaaaattgtttcgg---ctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagat 249  Q
    ||||||||  | | ||| ||||| | ||||||| ||   | |||||||||||||||||| | |||| || |||||||| |||   |||||||||||||||    
T  13470209 tcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaagtgtcaaggcatccaacatttagat 13470308  T
Q  250 ctt 252  Q
    |||    
T  13470309 ctt 13470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 497
Target Start/End: Original strand, 514392 - 514543
Alignment:
Q  346 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 445  Q
    |||||| ||||| ||||||||||||| ||||  || ||| ||||||||||||||||||||||| |   |||||  |||||||   |  |||||||||| |    
T  514392 ctcacacatttatccttgtttgcacttgttaagaactgtccttcacttagtgagatcaaaatgaattacacaagtattgggaaacaatgtgtagagaact 514491  T
Q  446 ctaattctttcaaggattttgttgtaagccctcaattgaagtctctccattt 497  Q
    | ||||||||   ||| |||||||| | ||||||||| || |||||| ||||    
T  514492 ccaattctttgttggactttgttgtgaaccctcaattaaaatctctctattt 514543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 51113537 - 51113596
Alignment:
Q  435 tgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctcca 494  Q
    ||||||||||||||||||||| | || |||||||||||| || ||||| |||||||||||    
T  51113537 tgtagagaattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctcca 51113596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 6866 - 6808
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  6866 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 6808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 789 - 731
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  789 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 2180 - 2122
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  2180 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 2122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 6966 - 6908
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  6966 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 6908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 14331 - 14273
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  14331 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 14273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 32113 - 32171
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  32113 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 32171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 50511 - 50569
Alignment:
Q  433 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 491  Q
    ||||||||||||| ||||||||| | |||| ||||| ||||||||||| | ||||||||    
T  50511 agtgtagagaattataattctttaatggatattgttataagccctcaaataaagtctct 50569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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