View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_high_2 (Length: 601)
Name: NF0917_high_2
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 138 - 572
Target Start/End: Complemental strand, 26546290 - 26545862
Alignment:
| Q |
138 |
catgtatgctaatgagtatgctattgtgattctttgtcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactcc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26546290 |
catgtatgctaatgagtatgctattgtgattctttgtcttctctctcaaactttactactaagacctaaaacttcatctactctttcgcacatcaactcc |
26546191 |
T |
|
| Q |
238 |
acttgttctccatatgcacttttaacgtttccgaaactcatgtttctaccttgttatccctaannnnnnnnggtgttatatgtttctcgtaattagtgaa |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
26546190 |
acttgttctccatatgcacttttaacgtttccgaaactcatgtttctaccttgttatccctaatattttttggtgt--tatgtttctcgtaattagtgaa |
26546093 |
T |
|
| Q |
338 |
tgtttatgaaacaaagcccnnnnnnntctatgttttctttattctgggaactatagattttgttaatttattaattgtatagtgttttgacaattagtag |
437 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26546092 |
tgtttctgaaacaaagccc---aaaatctatgttttctttattctaggaactatagattttgttaatttattaattgtatagtgttttgacaattagtag |
26545996 |
T |
|
| Q |
438 |
atataagcattgtcacgattaat-atctgatttaaaaacttgtgaaaaaattggggatttaattgtatgagttgtnnnnnnnnnnnnnggtcgtgatggc |
536 |
Q |
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|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
26545995 |
atataagcattgtcacaattattaatctgatttaaaaacttgtgaaaaaattggggatttaattgtgtgagttgt--aaaaaaaaaaaggtcgtgatggc |
26545898 |
T |
|
| Q |
537 |
atacatttaatctgatggtgattatttaatcctttc |
572 |
Q |
| |
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| T |
26545897 |
atacatttaatctgatggtgattatttaatcctttc |
26545862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 174 - 410
Target Start/End: Complemental strand, 26551984 - 26551753
Alignment:
| Q |
174 |
tcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttccgaaa |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26551984 |
tcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttcggaaa |
26551885 |
T |
|
| Q |
274 |
ctcatgtttctaccttgttatccctaannnnnnnnggtgttatatgtttctcgtaattagtgaatgtttatgaaacaaagcccnnnnnnntctatgtttt |
373 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
26551884 |
ctcatgtttctaccttgttatccctaatattttttggtgt--tatgtttctcgtaattagtcaatgtttctgaaacaaagccc---aaaatctatgtttt |
26551790 |
T |
|
| Q |
374 |
ctttattctgggaactatagattttgttaatttatta |
410 |
Q |
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| T |
26551789 |
ctttattctaggaactatagattttgttaatttatta |
26551753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 409 - 572
Target Start/End: Complemental strand, 26551470 - 26551303
Alignment:
| Q |
409 |
taattgtatagtgttttgacaattagtagatataagcattgtcacgattaata-tctgatttaaaaacttgtgaaaaaattggggatttaattgtatgag |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26551470 |
taattgtatagtgttttgacaattagtagatataagcattgtcacaattattaatctgatttaaaaacttgtgaaaaaattggggatttaattgtatgag |
26551371 |
T |
|
| Q |
508 |
ttgt---nnnnnnnnnnnnnggtcgtgatggcatacatttaatctgatggtgattatttaatcctttc |
572 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26551370 |
ttgtaaaaaaaaaaaaaaaaggtcgtgatggcatacatttaatctgatggtgattatttaatcctttc |
26551303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 26552296 - 26552257
Alignment:
| Q |
138 |
catgtatgctaatgagtatgctattgtgattctttgtctt |
177 |
Q |
| |
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| T |
26552296 |
catgtatgctaatgagtatgctattgtgattatttgtctt |
26552257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26546427 - 26546389
Alignment:
| Q |
1 |
ataattagacgagaacatgaacaacgttgaaccacgacg |
39 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26546427 |
ataattaaacgagaacatgaacaacgttgaaccacgacg |
26546389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 364 - 453
Target Start/End: Original strand, 35037508 - 35037597
Alignment:
| Q |
364 |
tctatgttttctttattctgggaactatagattttgttaatttattaattgtatagtgttttgacaattagtagatataagcattgtcac |
453 |
Q |
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||||| ||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35037508 |
tctatattttctttatttttgaaactatagattttgttaatttattatttgtatagtgttttgacaattagtagatataagcatcgtcac |
35037597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 35037312 - 35037413
Alignment:
| Q |
170 |
tttgtcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttcc |
269 |
Q |
| |
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|||||||||||||| |||||| | ||||||| |||||||| | |||||||||||||||||||||| ||||||||| || | |||| ||||||| |
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| T |
35037312 |
tttgtcttctctcttgaacttcatcactcagatctaaaactcc------tctttcgcacatcaactccactcgttctccatctgaaatttttacgtttct |
35037405 |
T |
|
| Q |
270 |
gaaactca |
277 |
Q |
| |
|
|||||||| |
|
|
| T |
35037406 |
gaaactca |
35037413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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