View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_high_26 (Length: 271)
Name: NF0917_high_26
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 10977667 - 10977841
Alignment:
| Q |
61 |
tgatactaacctgacaaatgggtacgataatcgccattttgcacatactcgtaaacaagatgaagtttgtgggtactagtaacatcttttccaccaccat |
160 |
Q |
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| T |
10977667 |
tgatactaacctgacaaatgggtacgataatcgccattttgcacatactcgtaaacaagatgaagtttgttggtactagtaacatcttttccaccaccat |
10977766 |
T |
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| Q |
161 |
cgatacaatgacctaaaagactaaccaaatttggatggtgaagctttgagagtaactccaacctagctttgagat |
235 |
Q |
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| T |
10977767 |
cgatacaatgacccaaaagactaaccagatttggatggtgaagcttcgagagtaagtccaacctagctttgagat |
10977841 |
T |
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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 8167508 - 8167341
Alignment:
| Q |
63 |
atactaacctgacaaatgggtacgataatcgccattttgcacatactcgtaaacaagatgaagtttgtgggtactagtaacatcttttccaccaccatcg |
162 |
Q |
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|||||||||||| | ||| ||| ||||||| |||||| ||||||| || || | |||||||||||| || | || | | ||||| | | |||||||| |
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| T |
8167508 |
atactaacctgatagatgagtatgataatctccatttggcacatattcatacataagatgaagttttgggatgcttgaatcatctcgttcgccaccatca |
8167409 |
T |
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| Q |
163 |
atacaatgacctaaaagactaaccaaatttggatggtgaagctttgagagtaactccaacctagcttt |
230 |
Q |
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||||||| ||| ||||| ||||||||||||||||| |||||||||||||| | |||||| ||||||| |
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| T |
8167408 |
atacaataacccaaaaggctaaccaaatttggatgttgaagctttgagaggtaatccaacttagcttt |
8167341 |
T |
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