View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_high_37 (Length: 251)
Name: NF0917_high_37
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 41324221 - 41324083
Alignment:
| Q |
59 |
taaaattttatgcaattgatttattgagtctatgttttggagcatgaaactgattaaatcgttcatgtgagctgcggtgtgtctatatatgtatcacgtt |
158 |
Q |
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| T |
41324221 |
taaaattttatgcaattgatttattgagtctatgttttggagcatgaaactgcataaatcgttcatgtgagctttgatgtgtctatatatgtatcacgtt |
41324122 |
T |
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| Q |
159 |
ggagtgccatcatatataacgatttgcatagataaccaa |
197 |
Q |
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| T |
41324121 |
ggagtgccatcatatataacaatttccatagataaccaa |
41324083 |
T |
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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 42308785 - 42308706
Alignment:
| Q |
118 |
cgttcatgtgagctgcggtgtgtctatatatgtatcacgttggagtgccatcatatataacgatttgcatagataaccaa |
197 |
Q |
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| T |
42308785 |
cgttcatgtgagttgcggtgtgtctatatatgtatcacgttggagtgccatcatatataacgatttgcatagataaccaa |
42308706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 4081862 - 4081954
Alignment:
| Q |
56 |
atgtaaaattttatgcaattgatttattgagtctatgttttggagcatgaaactgattaaatcgttcatgtgagctgcggtgtgtctatatat |
148 |
Q |
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| T |
4081862 |
atgtaaagttatatgcaattgatttattgagtctatgttttggagcatgaaactacagaattcatacatgtgagttacggtgtgtctatatat |
4081954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 4844821 - 4844768
Alignment:
| Q |
56 |
atgtaaaattttatgcaattgatttattgagtctatgttttggagcatgaaact |
109 |
Q |
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| T |
4844821 |
atgtaaagttatatgcaattgatttattgagtctatgttttggagcatgaaact |
4844768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 32315210 - 32315110
Alignment:
| Q |
56 |
atgtaaaattttatgcaattgatttattgagtctatgttttggagcatgaaactgattaaatcgttcatgtgagctgcggtgtgtctatatatgtatcac |
155 |
Q |
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| T |
32315210 |
atgtaaagttatatgcaattgatttatcgtgtctatgttttggagcatgaaactgcagaattcgttcacgtgaactgcgatgtgtgtctatatatatcac |
32315111 |
T |
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| Q |
156 |
g |
156 |
Q |
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| |
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| T |
32315110 |
g |
32315110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 39742845 - 39742881
Alignment:
| Q |
56 |
atgtaaaattttatgcaattgatttattgagtctatg |
92 |
Q |
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| T |
39742845 |
atgtaaagttatatgcaattgatttattgagtctatg |
39742881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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