View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_high_7 (Length: 554)
Name: NF0917_high_7
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 60 - 310
Target Start/End: Original strand, 13204736 - 13204992
Alignment:
| Q |
60 |
tataagagaagtgtaatttggtgcaaaacttttctcactaaaaacacgaacacacattttac------actccctatttatggttaatcatattgctatt |
153 |
Q |
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| T |
13204736 |
tataagagaagtgcaatttggtgcgaaatttttctcactaaaaacacgaacacaaattttacctgcaaactccctatttatggttaatcatattgctatt |
13204835 |
T |
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| Q |
154 |
gtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggct |
253 |
Q |
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| T |
13204836 |
gtgtctgcaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatgtatttaacacaataagttcactttgtttcatgattattaaggct |
13204935 |
T |
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| Q |
254 |
tgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgtgttatattt |
310 |
Q |
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| T |
13204936 |
tgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgttttatattt |
13204992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 135 - 367
Target Start/End: Original strand, 13178739 - 13178968
Alignment:
| Q |
135 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaa-ggtgtgttagttttcacctattttatatatttaacacaataagttcatttt |
233 |
Q |
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| T |
13178739 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaaggtgggttacctttcacacattttatgtatttaacataagaagttcaaatt |
13178838 |
T |
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| Q |
234 |
gtttcatgattattaaggcttgccttcaagtattcaattcaaactaatgatgataggagcaaaaatgtgttatatttttaatannnnnnnnatatactat |
333 |
Q |
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| T |
13178839 |
gtttcgtgattattaaggcttgtcctcatgtatgcaattcaaactaatgatgataggagcaaaaaagttttata--tttaata--ttttgaatatactat |
13178934 |
T |
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| Q |
334 |
aagagtttgttgtagattgaatccggggaacatg |
367 |
Q |
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| T |
13178935 |
aggagtttgttgtagattgaattaggggaacatg |
13178968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 13203831 - 13203913
Alignment:
| Q |
135 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaac |
217 |
Q |
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| T |
13203831 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccattctatgtatttaac |
13203913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 9944001 - 9943897
Alignment:
| Q |
155 |
tgtctccaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatatatttaacacaataagttcattttgtttcatgattattaaggctt |
254 |
Q |
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| T |
9944001 |
tgtcttcaaaggaatctactttgaaaaa--tgtgttacttttcgcccattttatgtatttaacctaataagttcactttgtttcatgcttattaaggttt |
9943904 |
T |
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| Q |
255 |
gccttca |
261 |
Q |
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| T |
9943903 |
gacttca |
9943897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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