View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_11 (Length: 519)

Name: NF0917_low_11
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_11
NF0917_low_11
[»] chr6 (10 HSPs)
chr6 (6-505)||(896365-896864)
chr6 (262-505)||(1192749-1192985)
chr6 (262-505)||(1181825-1182057)
chr6 (107-262)||(1182299-1182454)
chr6 (323-505)||(1187101-1187279)
chr6 (323-485)||(1197331-1197492)
chr6 (199-258)||(897125-897183)
chr6 (105-234)||(1237376-1237511)
chr6 (104-164)||(1193243-1193303)
chr6 (108-149)||(793867-793908)
[»] chr4 (3 HSPs)
chr4 (262-505)||(10203224-10203459)
chr4 (104-164)||(10203831-10203891)
chr4 (420-485)||(49611893-49611958)
[»] chr8 (8 HSPs)
chr8 (403-485)||(5171567-5171649)
chr8 (417-482)||(1795823-1795888)
chr8 (417-478)||(5185121-5185182)
chr8 (417-482)||(5195115-5195180)
chr8 (417-485)||(5207113-5207181)
chr8 (417-463)||(5177679-5177725)
chr8 (417-463)||(5198925-5198971)
chr8 (417-463)||(6231631-6231677)
[»] chr7 (3 HSPs)
chr7 (417-478)||(5178813-5178874)
chr7 (346-485)||(8306682-8306820)
chr7 (297-369)||(8551885-8551955)


Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Original strand, 896365 - 896864
Alignment:
Q  6 agttttcttgatgaatattattctatgaaatggtataatgatgagtcagggttttaggatgtttggtttagtttgaaatactgagatttgaagacccgtc 105  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896365 agttttattgatgaatattattctatgaaacggtataatgatgagtcagggttttaggatgtttggtttagtttgaaatactgagatttgaagacccgtc 896464  T
Q  106 tctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtattatatttgtgatgagatttattgatatagggtagattgaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  896465 tctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtattatacttgtgatgagatttattgatatagggtagattgaat 896564  T
Q  206 acttaggatattgttattgcatattgagtagaaatggggttttggatgagatgatggtgcatttaactccaaaatgtttataattaatgttatgttatgt 305  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  896565 acttaggatattgttattgcatattgagtacaaatggggttttggatgagatgatggtgcatttaactccaaaatatttataattaatgttatgttatgt 896664  T
Q  306 gtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngaacgattgcttttgcagca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  896665 gtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggaaaaaaagaacgattgcttttgcagca 896764  T
Q  406 tttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtttgttttaacacaattttaga 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896765 tttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtttgttttaacacaattttaga 896864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 262 - 505
Target Start/End: Original strand, 1192749 - 1192985
Alignment:
Q  262 gtgcatttaactccaaaatgtttataattaatgttatgttatgtgtagcttgtgagttgtataactctatttt-gtttatcatctaaaactacagttttt 360  Q
    ||||||||||||  ||||| |||||||||||||||||||     || ||||||||||| ||  |||||||||| ||||||||||||||||||||||||||    
T  1192749 gtgcatttaactaaaaaatatttataattaatgttatgt-----gtggcttgtgagttcta--actctatttttgtttatcatctaaaactacagttttt 1192841  T
Q  361 ctatgagacgctaatgggnnnnnnnga--acgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcata 458  Q
     |||||||||||||||||       ||  || ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1192842 gtatgagacgctaatgggaaaaaaagagaacaattgcttttgca---tttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcata 1192938  T
Q  459 agctctaaggagattgatgagaatgtttgttttaacacaattttaga 505  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  1192939 agctctaagaagattgatgagaatgtttgttttaacacaattttaga 1192985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 262 - 505
Target Start/End: Original strand, 1181825 - 1182057
Alignment:
Q  262 gtgcatttaactccaaaatgtttataattaatgttatgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttc 361  Q
    |||||||| ||||||||||||||||||||||||||||   |||||  ||||||||||| |   ||||||||||||||||||||||||||| ||| |||||    
T  1181825 gtgcattttactccaaaatgtttataattaatgttat---atgtg--gcttgtgagttctg--actctattttgtttatcatctaaaactgcagattttc 1181917  T
Q  362 tatgagacgctaatgggnnnnnnngaacgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagc 461  Q
    ||||||||||||||| |       || ||||||||||||||   |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1181918 tatgagacgctaatgagaaaaaaaga-cgattgcttttgca---tttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagc 1182013  T
Q  462 tctaaggagattgatgagaatgtttgttttaacacaattttaga 505  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  1182014 tctaagaagattgatgagaatgtttgttttaacacaattttaga 1182057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 1182299 - 1182454
Alignment:
Q  107 ctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtattatatttgtgatgagatttattgatatagggtagattgaata 206  Q
    ||||||| ||| |||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  1182299 ctaatgaatatgtggttaagaaaatgtgataaagtgataagtgctctctaataagtattatacttgtgatgagatttattgatatatggtatattgaata 1182398  T
Q  207 cttaggatattgttattgcatattgagtagaaatggggttttggatgagatgatgg 262  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  1182399 cttaggatattgttattgcatattgagtacaaatggggttttggatcagataatgg 1182454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 323 - 505
Target Start/End: Original strand, 1187101 - 1187279
Alignment:
Q  323 taactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngaacgattgcttttgcagcatttctgctgaaactaag 422  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |       |  ||||||||||||||   ||||| || | || |||    
T  1187101 taactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaaaaaaagg-cgattgcttttgca---tttcttctaatacgaag 1187196  T
Q  423 tgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtttgttttaacacaattttaga 505  Q
    |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| || ||||||||    
T  1187197 tgttggtggcatggcttgaaggatgtgaaagtcacaagctctatgaagattgatgagaatgtttgttttaagaccattttaga 1187279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 485
Target Start/End: Original strand, 1197331 - 1197492
Alignment:
Q  323 taactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnn--gaacgattgcttttgcagcatttctgctgaaacta 420  Q
    ||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| |         |||||| |||||||||||   ||||| ||| || |    
T  1197331 taactctattttgttaatcgtcgataactacagtttttctatgagacgttaatgagaaaaaaaaagaacgactgcttttgcag---ttctgatgatacaa 1197427  T
Q  421 agtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtt 485  Q
    ||||||||||||||| ||||||||||||||||||||  ||| ||| | |||| ||||||||||||    
T  1197428 agtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 1197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 897125 - 897183
Alignment:
Q  199 attgaatacttaggatattgttattgcatattgagtagaaatggggttttggatgagatg 258  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  897125 attgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatg 897183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 1237511 - 1237376
Alignment:
Q  105 ctctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtat--------tatatttgtgatgagatttattgatatagggt 196  Q
    ||||||||||||| |||||||||||||| ||||  |||||| ||  ||||||||||||||        |||| ||||| |||||||| ||||| || |      
T  1237511 ctctaatgagtatgtggttaagaaaatgtgata--gtgataggttctctctaatgagtatatgattattatacttgtgttgagatttgttgatgtatgac 1237414  T
Q  197 agattgaatacttaggatattgttattgcatattgagt 234  Q
    | ||||| ||||||||||||||||||||||||||||||    
T  1237413 atattgagtacttaggatattgttattgcatattgagt 1237376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 1193243 - 1193303
Alignment:
Q  104 tctctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtat 164  Q
    |||||||||||||| |||||||||||||| ||| || ||||||||| |||||  |||||||    
T  1193243 tctctaatgagtatgtggttaagaaaatgtgatgaaatgataagtgctctcttgtgagtat 1193303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 793908 - 793867
Alignment:
Q  108 taatgagtatttggttaagaaaatgagataaagtgataagtg 149  Q
    |||||| ||| |||||||||||||| ||||||||||||||||    
T  793908 taatgaatatgtggttaagaaaatgtgataaagtgataagtg 793867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 262 - 505
Target Start/End: Original strand, 10203224 - 10203459
Alignment:
Q  262 gtgcatttaactccaaaatgtttataattaatgttatgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttc 361  Q
    ||||||||| |||||||||||||||||||||||||   || ||||  ||||||||||| ||  ||||||||||||||||||||||||||||||||||||     
T  10203224 gtgcatttatctccaaaatgtttataattaatgtt---ttctgtg--gcttgtgagttcta--actctattttgtttatcatctaaaactacagtttttt 10203316  T
Q  362 tatgagacgctaatgggnnnnnnnga--acgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataa 459  Q
    |||||||||||||||||       ||  |||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10203317 tatgagacgctaatgggaaaaaaagagaacgattgcttttgca---tttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataa 10203413  T
Q  460 gctctaaggagattgatgagaatgtttgttttaacacaattttaga 505  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  10203414 gctctaagaagattgatgagaatgtttgttttaacacaattttaga 10203459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 10203831 - 10203891
Alignment:
Q  104 tctctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtat 164  Q
    |||||||||||||| ||||||| |||||| ||| |||||||||||| |||||| |||||||    
T  10203831 tctctaatgagtatgtggttaaaaaaatgtgatgaagtgataagtgctctctagtgagtat 10203891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 485
Target Start/End: Original strand, 49611893 - 49611958
Alignment:
Q  420 aagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtt 485  Q
    ||||||||||||||||||||||||||| ||||||||  ||  || ||| | |||||||||||||||    
T  49611893 aagtgttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgtt 49611958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 5171567 - 5171649
Alignment:
Q  403 gcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtt 485  Q
    ||||||||  ||| || ||||||||||||||||||||||||||||||||||| | |||||||| | ||||||| |||||||||    
T  5171567 gcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaatgtt 5171649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 482
Target Start/End: Complemental strand, 1795888 - 1795823
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaat 482  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  1795888 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 1795823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 5185121 - 5185182
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatga 478  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  5185121 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 5195115 - 5195180
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaat 482  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  5195115 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 5195180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 5207113 - 5207181
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtt 485  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||| | |||||||||||||||||    
T  5207113 actaggtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgtt 5207181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 5177679 - 5177725
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctc 463  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  5177679 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctc 5177725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 5198971 - 5198925
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctc 463  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  5198971 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctc 5198925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 6231631 - 6231677
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctc 463  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6231631 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctc 6231677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 5178813 - 5178874
Alignment:
Q  417 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatga 478  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  5178813 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5178874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 485
Target Start/End: Original strand, 8306682 - 8306820
Alignment:
Q  346 aaaactacagtttttctatgagacgctaatgggnnnnnnnga--acgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaag 443  Q
    |||||||||||||||||||||||| |||||| |       ||  |||| ||||||||||||   |||  ||| || ||||||||||||||||||||||||    
T  8306682 aaaactacagtttttctatgagactctaatgagaagaaaagacgacgactgcttttgcagc---tctaatgatacaaagtgttggtggcatggcttgaag 8306778  T
Q  444 gatgtgaaagtcataagctctaaggagattgatgagaatgtt 485  Q
    ||| ||||||||| | |||| | | | |||||||||||||||    
T  8306779 gatttgaaagtcacacgctcaatgaaaattgatgagaatgtt 8306820  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 8551955 - 8551885
Alignment:
Q  297 atgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagac 369  Q
    |||||||||| ||||| ||||||  ||||| ||||||| || ||  || ||||||||||||||||||||||||    
T  8551955 atgttatgtggagcttctgagtt--ataacgctattttattaattgtccaaaactacagtttttctatgagac 8551885  T

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