View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_12 (Length: 478)
Name: NF0917_low_12
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 471
Target Start/End: Original strand, 27841235 - 27841681
Alignment:
| Q |
30 |
ttaagtagtacaaccttcacctacatcacatgcatgacttgtagtgggtccttttggattcatctttagatcctcaccgcatcaacatgaccttagagat |
129 |
Q |
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| T |
27841235 |
ttaagtagtacaaccttcacctacatcacatgcatgacttgtagtgggtccttttggattcatctttagatcctcaccgcatcaacatgaccttagagat |
27841334 |
T |
|
| Q |
130 |
taccaaagaacagacaaggatgtcttacataagccattgtttggtagaagtactttttatcaaacacccttttggatatatattacatgtgtgtgtacat |
229 |
Q |
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| T |
27841335 |
taccaaagaacagacaaggatgtcttacataagccattgtttggtagaagtactttttatcaaacacccttttgggtatatattacatgtgtgtgtacat |
27841434 |
T |
|
| Q |
230 |
aaatatggatcacataatgttgatagtaccttaatcaacttggtaagtggcagcacacatgtgtacgtttactggccatgatatggggtccgttataggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27841435 |
aaatatggatcacataatgttgatagtaccttaatcaacttggtaagtggcagcacacatgtgtacgtttactggccatgatatggggtccgttataggt |
27841534 |
T |
|
| Q |
330 |
acagtcatcacattttatcaaaatatcaaacttccttttatatgagggtaattattg------ttaattgcgtcttctttttgtgctttccccacttgtg |
423 |
Q |
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| T |
27841535 |
acagtcatcacattttatcaaaatatcaaccttccttttatatgagggtaattattgttaggcttaattgcgtcttctttttgtgcttt-cccacttgtg |
27841633 |
T |
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| Q |
424 |
gttctaattccctctaattccaaatacatagcctagccccctatgcta |
471 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
27841634 |
gttctaattccctctaattccaaattcatagcctagccccctttgcta |
27841681 |
T |
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