View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_19 (Length: 397)
Name: NF0917_low_19
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 73 - 368
Target Start/End: Complemental strand, 41062611 - 41062316
Alignment:
| Q |
73 |
atgctacgcacacaaaagatataaataaatgtaggtaggtaccttagcgtcaagttccttgtgtggaagagctgtccataaagctagaattgaggtaaga |
172 |
Q |
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| T |
41062611 |
atgctaagcacacaaaagatataaataaatgtaggtaggtaccttagcgtcaagttccttgtgtggaagagctgtccataaagctagaattgaggtaaga |
41062512 |
T |
|
| Q |
173 |
atttggccctagaatagaaagttgattagggagaggcagaaggtaagtaagtattattaaaaagataatagaatgaaagaagcttgcctgagttccgcat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41062511 |
atttggccctagaatagaaagttgattagggagaggcagaaggtaagtaagtattattaaaaagataatagaatgaaagaagcttgcctgagttccgcat |
41062412 |
T |
|
| Q |
273 |
agagcaattagatctcctacatgaagaacaccattaactaaaacaacattgataacggttccatggccttgaaggagcttgacatccaaaacagta |
368 |
Q |
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| T |
41062411 |
agagcaatttgatctcctacatgaagaacaccattaactaaaacaacattgatagcggttccatggccttgaaggagcttgacatccaaaacagta |
41062316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41062779 - 41062741
Alignment:
| Q |
1 |
tagattataatcatggatgaggataggatattattactt |
39 |
Q |
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| T |
41062779 |
tagattataatcatggatgaggataggatattattactt |
41062741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 41373405 - 41373324
Alignment:
| Q |
241 |
tagaatgaaagaagcttgcctgagttccgcatagagcaattagatctcctacatgaagaacaccattaactaaaacaacatt |
322 |
Q |
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| T |
41373405 |
tagaatcagagatgcttgcctgccttccacatacagctatttgatctccttcatgtagaacaccattaactaaaacaacatt |
41373324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 183348 - 183263
Alignment:
| Q |
283 |
gatctcctacatgaagaacaccattaactaaaacaacattgataacggttccatggccttgaaggagcttgacatccaaaacagta |
368 |
Q |
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| T |
183348 |
gatctccttcatgaagaacaccattaactaaaacaacattaatagtagttccatagccttcaataaccttgacttccaaaacagta |
183263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 29219621 - 29219650
Alignment:
| Q |
292 |
catgaagaacaccattaactaaaacaacat |
321 |
Q |
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| T |
29219621 |
catgaagaacaccattaactaaaacaacat |
29219650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 44628193 - 44628112
Alignment:
| Q |
283 |
gatctcctacatgaagaacaccattaactaaaacaacattgataacggttccatggccttgaaggagcttgacatccaaaac |
364 |
Q |
| |
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| T |
44628193 |
gatccccttcatgaagaacaccattaactaaaacaacatcaatagtagttccatggccttcaataaccttgacttccaaaac |
44628112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 44606709 - 44606650
Alignment:
| Q |
283 |
gatctcctacatgaagaacaccattaactaaaacaacattgataacggttccatggcctt |
342 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
44606709 |
gatccccttcatgaagaacaccattaactaaaacaacatcaatagtagttccatggcctt |
44606650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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