View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_2 (Length: 778)

Name: NF0917_low_2
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_2
NF0917_low_2
[»] chr3 (1 HSPs)
chr3 (39-769)||(52834249-52834979)


Alignment Details
Target: chr3 (Bit Score: 719; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 39 - 769
Target Start/End: Complemental strand, 52834979 - 52834249
Alignment:
Q  39 atttaaaaattagattaatacaagaacttatggaataacttgacatcctccttctctgataagaaactgtggtaaaaattaacagattcctcgaagtgga 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834979 atttaaaaattagattaatacaagaacttatggaataacttgacatcctccttctctgataagaaactgtggtaaaaattaacagattcctcgaagtgga 52834880  T
Q  139 tgaacaagcctggcatggcctaaaggaaactgctggttcttcttcccaattcaggcatcatctgggagatgtatgttggtcattctcttcccttttcatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52834879 tgaacaagcctggcatggcctaaaggaaactgctggttcttcttcccaattcaggcatcatctgggagatgtatgttgttcattctcttcccttttcatt 52834780  T
Q  239 ttctgtatcaaagactaaagttgattattggcattgcaaatctcttttcttgtatattggaaagaaaaaacactaaaaggatagttatatcattccagtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834779 ttctgtatcaaagactaaagttgattattggcattgcaaatctcttttcttgtatattggaaagaaaaaacactaaaaggatagttatatcattccagtt 52834680  T
Q  339 ctttaaagtactgtcagaggaaggtgatgcgtctgctaaagatagattagataaagaagccgcattgaccaacgcggttgatgcaactgaggcaagcatg 438  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834679 ctttaaagtactgtcagaggaaggtgatgcgtcttctaaagatagattagataaagaagccgcattgaccaacgcggttgatgcaactgaggcaagcatg 52834580  T
Q  439 aagagcattgctgattctttgtgcagaggtcatgagcagaaaactagaagcgaagataatttatgtgacaccgagttaaaattatatgctgtgggtgctg 538  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834579 aagagcattgctgattcttcgtgcagaggtcatgagcagaaaactagaagcgaagataatttatgtgacaccgagttaaaattatatgctgtgggtgctg 52834480  T
Q  539 agcctgatggtgaaaccaaggagagctcagctttgcttcctctagagacacaatcttccactgctcttgaaaatgaaaaacctttggaggaggcatccat 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834479 agcctgatggtgaaaccaaggagagctcagctttgcttcctctagagacacaatcttccactgctcttgaaaatgaaaaacctttggaggaggcatccat 52834380  T
Q  639 catcagttatcagagaaaagtgacagttctttacactcttctttctgcttgtgtagcagatacggctgaggttgacaaaaagttcagcaagtcaaggcag 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52834379 catcagttatcagagaaaagtgacagttctttacactcttctttctgcttgtgtagcagatacggctgaggttgacaaaaagttcagcaagtcaaggcag 52834280  T
Q  739 ggatatgatgctcgtcaccgcgtctctctgc 769  Q
    |||||||||||||||||||||||||||||||    
T  52834279 ggatatgatgctcgtcaccgcgtctctctgc 52834249  T

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