View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_20 (Length: 396)
Name: NF0917_low_20
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 71 - 382
Target Start/End: Complemental strand, 38392875 - 38392564
Alignment:
| Q |
71 |
catgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcata |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38392875 |
catgcatcctctaacttgttattttctttcttttctctccattgaattgttttgttctaatttcagttcttgtggattaagtcatacaaaaatgagcata |
38392776 |
T |
|
| Q |
171 |
aattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttat |
270 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38392775 |
aattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaatgtttgttctgaggctccaccccatattgtttcagatggtttat |
38392676 |
T |
|
| Q |
271 |
ggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38392675 |
ggggtggctacgaaaatggaaggagaccaatgaaatccttcttgatcttgtttgagttacaattggttatcatttttgcactcactcaaatatgtagttt |
38392576 |
T |
|
| Q |
371 |
tcttctcaaacc |
382 |
Q |
| |
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|||||||||||| |
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| T |
38392575 |
tcttctcaaacc |
38392564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 93 - 386
Target Start/End: Complemental strand, 38383995 - 38383703
Alignment:
| Q |
93 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaattttactttgttca |
192 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38383995 |
tttctttcttttctctccattgaattgttttgttctaatttcaattcttgtggattaagtcatacaaaa-tgagcataaattcaaattatactttgttca |
38383897 |
T |
|
| Q |
193 |
acgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaag |
292 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
38383896 |
acgaaattaaaagattgaatggaccaatatacaaagtttgttttgaggctccaccccatattgtttcagatggtttatggggtggccacgataatggaag |
38383797 |
T |
|
| Q |
293 |
gagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
386 |
Q |
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||||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38383796 |
gagaccaatgaaatccttcttaacattgtttgagttacagttgattatcatttttgcactcactcaaatatgtagtttccttctcaaacctttg |
38383703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 93 - 386
Target Start/End: Complemental strand, 38401429 - 38401136
Alignment:
| Q |
93 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaattttactttgttca |
192 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
38401429 |
tttctttcttttcactccattgaattgttttgttctaatttcaattcttgtgaattaagtcatacgaaaatgagcataaattcaaatgatactttgttct |
38401330 |
T |
|
| Q |
193 |
acgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaag |
292 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
38401329 |
accaaattaaaagattgaatgaaacaatatacaatgtttgtattgaggctccacctcctattgtttcagatggtttatgggctggccacgaaaatggaaa |
38401230 |
T |
|
| Q |
293 |
gagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
386 |
Q |
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|| ||||||||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38401229 |
gacaccaatgaaattcttctttcccatgtttgagttacaattggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
38401136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 93 - 386
Target Start/End: Original strand, 37838366 - 37838659
Alignment:
| Q |
93 |
tttctttcttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaattttactttgttca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37838366 |
tttctttcttttctctccattgaattgttttgttttcatttcaattcttgtggattaagtcatacaaaaatgagcataaattcaaatgatactttgttct |
37838465 |
T |
|
| Q |
193 |
acgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacgaaaatggaag |
292 |
Q |
| |
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||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
37838466 |
acgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggctccaccccatattgtttcagatggtttatggagtggtcacgaaaatgaaag |
37838565 |
T |
|
| Q |
293 |
gagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacctttg |
386 |
Q |
| |
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||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37838566 |
gagaccaatgaaatcttttttgaccttgtttgagttacaattggttatcatttttgcactcacacaaatatgcagtttccttctcaaacctttg |
37838659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 37843920 - 37844222
Alignment:
| Q |
86 |
ttgttattttctttc--ttttctctccattgaattgttttgttctgatttcagttcttgtggattaagtcatacaaaaatgagcataaattcaaatttta |
183 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
37843920 |
ttgttattttctttccattctctctccattgaattgttttgttctaatttcaattcttgtggaataagtcatacaaaaatgagcataaattcaaatgata |
37844019 |
T |
|
| Q |
184 |
ctttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctccaccccatattgtttcagatggtttatggggtggctacga |
283 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
37844020 |
ctttgttctacgaaattaaaagattgaatgaagcaggttacaaaatttatttagaggctccaccccatattgtttcagatggtttatggggtggccatga |
37844119 |
T |
|
| Q |
284 |
aaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcatttttgcactcactcaaatatgtagttttcttctcaaacct |
383 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| || |
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|
| T |
37844120 |
aaatggaaggagaccaatgaaatctttcttgaccttgtttgagttacaattggttatcatttttgcactcacgcaaatatgtcgttttcttctcaaatct |
37844219 |
T |
|
| Q |
384 |
ttg |
386 |
Q |
| |
|
||| |
|
|
| T |
37844220 |
ttg |
37844222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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