View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_21 (Length: 394)
Name: NF0917_low_21
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 1077834 - 1078185
Alignment:
| Q |
11 |
acaatatatattcccactgatttgattagacctgttatttattttgtcctttccctaccactatcactgttcttgcatcagttgctgaaattatgaaatt |
110 |
Q |
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| T |
1077834 |
acaaaatatattcccactgatttgattagacctgttatttattttgtcctttccctaccactatcactgttcttgcatcagttgctgaaattatgaaatt |
1077933 |
T |
|
| Q |
111 |
caaattcaaaggttgttataaactcgttaataacctttgacctcagctagtgtttcaggcctcaatgtactgtacctagttcnnnnnnnnctttatgcta |
210 |
Q |
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| T |
1077934 |
caaattcaaaggttgttataaactcgttaataacctttgacctcagctagtgtttcaggcctcaatgtactgtacctagttcttttttttctttatgcta |
1078033 |
T |
|
| Q |
211 |
tgtattattactttcnnnnnnnnnggtacaatgaatttattagtactatgacacaacacaatgtgttagaaaaagccacaatattctccttctccatttg |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1078034 |
tgtattattacttt---tttttttggtacaatgaatttattagtactatgacacaacacaatgtgttagaaaaagccacaatattctccttctccatttg |
1078130 |
T |
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| Q |
311 |
gtatgtgacacaaaggtgctagaaaagccctaaacaagatagttaattcaagtag |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1078131 |
gtatgtgacacaaaggtgctagaaaagccctaaacaagatagttaattcaagtag |
1078185 |
T |
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