View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_23 (Length: 391)

Name: NF0917_low_23
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_23
NF0917_low_23
[»] chr3 (7 HSPs)
chr3 (1-140)||(29712976-29713115)
chr3 (5-330)||(29746701-29747035)
chr3 (1-89)||(29751847-29751935)
chr3 (27-96)||(30223119-30223188)
chr3 (12-96)||(30230345-30230429)
chr3 (1-96)||(29649030-29649125)
chr3 (10-96)||(30201178-30201264)
[»] chr4 (1 HSPs)
chr4 (150-317)||(41100698-41100869)
[»] chr8 (1 HSPs)
chr8 (3-94)||(1152915-1153006)
[»] chr1 (2 HSPs)
chr1 (1-82)||(16955668-16955749)
chr1 (1-81)||(16966187-16966267)
[»] chr5 (1 HSPs)
chr5 (60-96)||(11635019-11635055)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 29712976 - 29713115
Alignment:
Q  1 ttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatgacttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29712976 ttgatactgttgaaattgtgacaagtgcacgtaatgtttgttctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatgatttg 29713075  T
Q  101 tcgttttaactttagtagttcgtgcatggagaagatttgt 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29713076 tcgttttaactttagtagttcgtgcatggagaagatttgt 29713115  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 29747035 - 29746701
Alignment:
Q  5 tactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatgacttgtcgt 104  Q
    |||| |||| |||||||||| |||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||  || || ||    
T  29747035 tactattgatattgtgacaagtgcacgcaatgtttgtcctttgtggcggaaaatttgccaggaccctctaatgtggcgtaccattcacatagctagtggt 29746936  T
Q  105 tttaactttagtagtt---cgtgcatggagaagatttgtcgctgtgcaattgacctaagttgcggtcaactagaagacattgctgttagggggtttggaa 201  Q
    || | | ||  | |||   | | ||||| ||||||||||||| |||| |||||||||||| || || | || ||||||||| || ||||  |||||| ||    
T  29746935 ttcaccattgattgttttgcttacatggggaagatttgtcgcagtgccattgacctaagtagcagtaatctggaagacattactattagctggtttgcaa 29746836  T
Q  202 cagatgaacttctcaaatatatggctcataggtaatta---------gttttgtttgtttcaattccaattgtttcataataatacaataatttgttaag 292  Q
    | |||||||||||  ||||| |||||||||||||||||          ||||||||||||||||||||   ||||||||||||||| ||| |||||||      
T  29746835 ctgatgaacttcttgaatatttggctcataggtaattaattagttgcattttgtttgtttcaattcca---gtttcataataatactatattttgttatc 29746739  T
Q  293 aactgtactgatccttctttatatgccatcttgcttaa 330  Q
    ||| | | |||||||||||  |||||||||||||||||    
T  29746738 aacagcattgatccttcttgctatgccatcttgcttaa 29746701  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 29751847 - 29751935
Alignment:
Q  1 ttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccatt 89  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||| ||||  |||||||||||||||| |||||| ||||||||    
T  29751847 ttgataccgttgaaattgtgacaagtgcacgtaatgtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 30223119 - 30223188
Alignment:
Q  27 gcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 96  Q
    ||||| ||||| |||||||  ||| |||| ||||||||||||||||| |||||||| |||||||||||||    
T  30223119 gcacgcaatgtgtgtccttattggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 30230345 - 30230429
Alignment:
Q  12 gaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 96  Q
    |||||| |||||| |||||| ||||| |||||||  ||| |||  ||||||||||||||||  |||||||| |||||||||||||    
T  30230345 gaaattttgacaaatgcacgcaatgtgtgtccttattggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatga 30230429  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29649030 - 29649125
Alignment:
Q  1 ttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 96  Q
    ||||||||||||||||||| |||| |||| |    || |||||| | | | |||| ||||| ||||||||||| ||||||||||||||||||||||    
T  29649030 ttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctatcgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatga 29649125  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 30201178 - 30201264
Alignment:
Q  10 ttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatga 96  Q
    ||||||||||||||| |||| || | || |||||| | ||| |||| ||||||||||||||||| |||||||  |||||||| ||||    
T  30201178 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctctcatgtggcacaccattcatatga 30201264  T

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Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 41100869 - 41100698
Alignment:
Q  150 attgacctaagttgcggtcaactagaagacattgctgttagggggtttggaacagatgaacttctcaaatatatggctcataggtaattagttttgtttg 249  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  41100869 attgacctaagttgcagtcatctggaagacattgctgttagggggtttggaaccgatgaacttctcaaatatatggctcataggtaattagttttctttg 41100770  T
Q  250 tttcaattccaatt----gtttcataataatacaataatttgttaagaactgtactgatccttctttatatg 317  Q
    ||||||||||| ||    |||||||||||||| ||||||||||||  ||||||||||||||||||| |||||    
T  41100769 tttcaattccagtttgcagtttcataataatataataatttgttatcaactgtactgatccttcttgatatg 41100698  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 1153006 - 1152915
Alignment:
Q  3 gatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacat 94  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||    
T  1153006 gatactgttgaaattgtaacaagtgcacgtaatgtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattcacat 1152915  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16955749 - 16955668
Alignment:
Q  1 ttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggcg 82  Q
    |||||||| |||||||||| |||| || | || | || || ||||| ||| |||||||||||||||||||||| ||||||||    
T  16955749 ttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16966267 - 16966187
Alignment:
Q  1 ttgatactgttgaaattgtgacaattgcacgtaatgtttgtcctttgtggcggaatatttgcaaggatcctctaatgtggc 81  Q
    |||||||| ||||||| || |||| || | || | || |||||||| ||| |||||||||||||||||||||  |||||||    
T  16966267 ttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatgtggc 16966187  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 11635019 - 11635055
Alignment:
Q  60 tgcaaggatcctctaatgtggcgtaccattcacatga 96  Q
    |||||||||||||| |||||||||||||||| |||||    
T  11635019 tgcaaggatcctctcatgtggcgtaccattcgcatga 11635055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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