View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_25 (Length: 375)
Name: NF0917_low_25
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 232 - 347
Target Start/End: Complemental strand, 32007021 - 32006906
Alignment:
| Q |
232 |
aatgaagagagagtaagattaagagaatttgataggaaccaagagatgctataattgaacaacataagcaagatgaagaaattgagtgtaattaagaaaa |
331 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32007021 |
aatgaagagagattaagattaagagaatttgataggaaccaagagatgctataattgaacaacataagcaagatgaagaaattgagtgtaattaagaaaa |
32006922 |
T |
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| Q |
332 |
atatagtgctttcttt |
347 |
Q |
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|||||||||||||||| |
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| T |
32006921 |
atatagtgctttcttt |
32006906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 32007392 - 32007265
Alignment:
| Q |
27 |
caacgactaggaaaaataaaacaagtaggagaacctctagtaggcaacacaaagactgaaaacactctccaaaatcaactcaagcacgtatacttgaatg |
126 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32007392 |
caaccactatgaaaaataaaacaagtaggagaacctctagtaggcaacacaaagactgaaaacactctccaaaatcaactcaagcaggtatacttgaatg |
32007293 |
T |
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| Q |
127 |
aagtacaaacttaagaggaaaaccataa |
154 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
32007292 |
aagtacacacttaagaggaaaaccataa |
32007265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 32007122 - 32007074
Alignment:
| Q |
149 |
ccataagagaaattagtcatatttaccaattgatcaataacggtggtat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32007122 |
ccataagagaaattagtcatatttaccaattgatcaataacggtggtat |
32007074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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