View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_26 (Length: 360)
Name: NF0917_low_26
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 43815031 - 43814901
Alignment:
| Q |
29 |
acatgatgtatctattcttctcttaccatatttaacaaaatgttgagaaccaaaatctacttgtttgagcaacaatttgtaaatagatatatatagttat |
128 |
Q |
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| T |
43815031 |
acatgatgtatctattcttctcttaccatatttaacaaaatgttgagaaccaaaatctacttgtttgagcaacaatttgtaaatagatatatatagttat |
43814932 |
T |
|
| Q |
129 |
tggatattgatgtagctaattcaatgtttga |
159 |
Q |
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| T |
43814931 |
tggatattgatgtagctaattcaatgtttga |
43814901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 43814378 - 43814317
Alignment:
| Q |
231 |
ttaatatgaattttaataaaaagtgttgaaaaatacgcgttaaaatgtttgatgctaatatt |
292 |
Q |
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| T |
43814378 |
ttaatatgaattttaatagaaaatattgaaaaatacgtgttaaaatgtttgatgctaatatt |
43814317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 43814832 - 43814789
Alignment:
| Q |
169 |
agaggaggtttgtttatatggatcccacatgatatattaaattt |
212 |
Q |
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| T |
43814832 |
agaggaggtttgtttatatggatcccacatgatatattaaattt |
43814789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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