View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_3 (Length: 726)

Name: NF0917_low_3
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_3
NF0917_low_3
[»] chr3 (15 HSPs)
chr3 (333-697)||(52039846-52040209)
chr3 (163-332)||(548327-548496)
chr3 (30-144)||(42656164-42656282)
chr3 (30-121)||(52040529-52040620)
chr3 (163-248)||(40131990-40132075)
chr3 (163-248)||(782838-782922)
chr3 (160-248)||(10018774-10018861)
chr3 (160-248)||(10256088-10256175)
chr3 (119-161)||(52040206-52040248)
chr3 (160-248)||(10123314-10123401)
chr3 (178-245)||(10744818-10744885)
chr3 (163-200)||(17743104-17743141)
chr3 (163-200)||(19044424-19044461)
chr3 (245-277)||(42656291-42656323)
chr3 (162-201)||(10661755-10661794)
[»] chr2 (6 HSPs)
chr2 (163-332)||(600485-600655)
chr2 (163-244)||(31269463-31269543)
chr2 (163-201)||(24038363-24038401)
chr2 (163-201)||(24039558-24039596)
chr2 (163-201)||(31180317-31180355)
chr2 (269-306)||(24101671-24101708)
[»] chr1 (2 HSPs)
chr1 (163-334)||(2427196-2427369)
chr1 (253-318)||(50549390-50549455)
[»] chr7 (5 HSPs)
chr7 (163-248)||(25432120-25432205)
chr7 (163-201)||(41832706-41832744)
chr7 (518-623)||(13928349-13928451)
chr7 (163-201)||(8083389-8083427)
chr7 (163-201)||(41830300-41830338)
[»] scaffold0005 (1 HSPs)
scaffold0005 (236-318)||(58501-58582)
[»] chr4 (6 HSPs)
chr4 (236-318)||(14781148-14781229)
chr4 (169-248)||(7785283-7785362)
chr4 (163-244)||(2547078-2547158)
chr4 (279-332)||(51811762-51811815)
chr4 (284-332)||(51811813-51811861)
chr4 (162-201)||(21215020-21215059)
[»] chr6 (5 HSPs)
chr6 (170-248)||(1136235-1136313)
chr6 (236-321)||(3064795-3064881)
chr6 (163-244)||(6825508-6825588)
chr6 (162-201)||(30689633-30689672)
chr6 (163-201)||(8655827-8655865)
[»] scaffold0655 (1 HSPs)
scaffold0655 (164-248)||(698-782)
[»] chr5 (7 HSPs)
chr5 (236-327)||(31692845-31692937)
chr5 (162-201)||(43233925-43233964)
chr5 (162-200)||(41949332-41949370)
chr5 (163-244)||(21254206-21254286)
chr5 (163-200)||(41951731-41951768)
chr5 (149-201)||(21256720-21256771)
chr5 (163-201)||(26873161-26873199)
[»] scaffold0959 (1 HSPs)
scaffold0959 (162-202)||(407-447)
[»] scaffold0023 (1 HSPs)
scaffold0023 (162-202)||(111543-111583)
[»] chr8 (3 HSPs)
chr8 (162-200)||(5690859-5690897)
chr8 (159-248)||(3567484-3567572)
chr8 (163-192)||(12464815-12464844)
[»] scaffold0862 (1 HSPs)
scaffold0862 (163-201)||(322-360)
[»] scaffold0525 (1 HSPs)
scaffold0525 (163-201)||(2028-2066)
[»] scaffold0001 (1 HSPs)
scaffold0001 (163-244)||(144661-144741)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 333 - 697
Target Start/End: Complemental strand, 52040209 - 52039846
Alignment:
Q  333 attgcagctattgtaggtatatatata--ctctgcatcgatttgcnnnnnnncattgcagctattgtggtaattcttcttccccattggtgtatcttatg 430  Q
    |||||||||||||||| ||||||||||  |||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52040209 attgcagctattgtagatatatatatatactctgcatcggtttgctttttttcattgcagctattgtggtaattcttcttccccattggtgtatcttctg 52040110  T
Q  431 cggcnnnnnnngctctacagcagacattgtttggcttgtaaacaatatggttaggaaaatacgtttcactttcaaactataaagtttatttccaaagttt 530  Q
    ||||       ||||||||  |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  52040109 cggcaaaaaaagctctacaatagacattgtttggcttctaaacaatacgattaggaaaatacgtttcaccttcaaactataaagttgatttccaaagttt 52040010  T
Q  531 attcttccaaacttatcatgttgttggctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtattcgcaaatcaacccc 630  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52040009 attcttccaaacttatcatgttg---gctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtattcgcaaatcaacccc 52039913  T
Q  631 gttacatacaattgagtaaataaaagaatgcagacaagtgaaatgcatcaaattgaagggttcaaat 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52039912 gttacatacaattgagtaaataaaagaatgcagacaagtgaaatgcatcaaattgaagggttcaaat 52039846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 163 - 332
Target Start/End: Complemental strand, 548496 - 548327
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgagaaagttagttacaa 262  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  548496 tgttagaaaacttggcatccatggaaggaatgagagaaatagatcaaagttcttagtattgatggaaaatgaatattacaaatgagaaagttagttacta 548397  T
Q  263 tgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaata 332  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  548396 tgtgataccttaagcctatttataggcactaactaactagtaattatatgactaacatatatctctaata 548327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 42656164 - 42656282
Alignment:
Q  30 ctccaataatattcaaatttgaataagagtcatggagt---ataacctattggatacagttccaatgc-nnnnnnncggtgcctcattattactaccatt 125  Q
    ||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||        | ||||||||||||||||||||||    
T  42656164 ctccaataacattcaaatttgaataagagtcatggagtataataacctattggatacagttccaatgcaaaaaaagcagtgcctcattattactaccatt 42656263  T
Q  126 tttcaatgctttattgtgg 144  Q
    |||||||||| ||||||||    
T  42656264 tttcaatgctctattgtgg 42656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 52040620 - 52040529
Alignment:
Q  30 ctccaataatattcaaatttgaataagagtcatggagtataacctattggatacagttccaatgcnnnnnnncggtgcctcattattactac 121  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||    
T  52040620 ctccgataacattcaaatttgaataagagtcatggagtataacctattggatacaattccaatgcaaaaaagcggtgcctcattattactac 52040529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 40132075 - 40131990
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  40132075 tgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgataaaaattgaatattacaaatgag 40131990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 782838 - 782922
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaatgag 782922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 10018774 - 10018861
Alignment:
Q  160 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10018861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 10256088 - 10256175
Alignment:
Q  160 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | |||| || ||||||||||||||||   |||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactt-tttgtattgatggaaatgaaatattacaaatgag 10256175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 52040248 - 52040206
Alignment:
Q  119 taccatttttcaatgctttattgtgggagttcttttttcattg 161  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  52040248 taccatttttcaatgctctattgtgggagttcttttttcattg 52040206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 10123314 - 10123401
Alignment:
Q  160 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    |||||||||||||||||||||||||| || ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10123401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 10744885 - 10744818
Alignment:
Q  178 catccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaat 245  Q
    ||||||| |||||||||||||||||  |  |||| |||||||||||||||||| ||||||||| ||||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaat 10744818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 17743141 - 17743104
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 19044461 - 19044424
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 42656291 - 42656323
Alignment:
Q  245 tgagaaagttagttacaatgtgacaccttaagc 277  Q
    |||||||||||||||||||||||||||||||||    
T  42656291 tgagaaagttagttacaatgtgacaccttaagc 42656323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 10661755 - 10661794
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  10661755 ttgttaggaaacatgacatccatggaaagaatgagagaaa 10661794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 600485 - 600655
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatag--atcaaagttctttgtattgatggaaaatgaatatta---caaatgagaaagttagt 257  Q
    |||||||||||||| |||||||| |||||| |||||||| ||  || |||||  |||  ||||||||||| |||||||||   ||| ||| |||||||||    
T  600485 tgttaggaaacatgacatccatgaaaggaaagagagaaa-agttatgaaagtatttt--attgatggaaa-tgaatattattacaattgacaaagttagt 600580  T
Q  258 tacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaata 332  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  600581 tacaatgtgacaccttaagcctatttataggcactaactaactagtaactatatgactaacatatatctctaata 600655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 31269463 - 31269543
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 244  Q
    |||||||||||||||||||||||||||||| ||||||||   |  |||  ||||| |||||||||||| |||||||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaattgaatattacaaa 31269543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 24038401 - 24038363
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaa 24038363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 24039596 - 24039558
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaa 24039558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 31180355 - 31180317
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaa 31180317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 24101671 - 24101708
Alignment:
Q  269 accttaagcatatttataggcactaactaactagtaac 306  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  24101671 acctcaagcctatttataggcactaactaactagtaac 24101708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 334
Target Start/End: Complemental strand, 2427369 - 2427196
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatag--atcaaagttctttgtattgatggaaaatgaatatta---caaatgagaaa-gttag 256  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||   ||  ||||||||||| |||||||||   ||| || |||| ||| |    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaa-agctataaaagtaactt--attgatggaaa-tgaatattattacaattgggaaaagttgg 2427274  T
Q  257 ttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaataat 334  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  2427273 ttacaatgtgacaccttaagcctatttataggcactaactaactagtaactatatgactgatatatatctctaataat 2427196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 50549390 - 50549455
Alignment:
Q  253 ttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 318  Q
    |||||||||||||||||||| || | ||||||||| ||||| ||||||| |||||| |||||||||    
T  50549390 ttagttacaatgtgacacctcaaacttatttatagacactagctaactactaactagatgactaac 50549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 25432205 - 25432120
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||| ||||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| |||||||||| ||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaatgag 25432120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 41832744 - 41832706
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaa 41832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 623
Target Start/End: Original strand, 13928349 - 13928451
Alignment:
Q  518 atttccaaagtttattcttccaaac-ttatcatgttgttggctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtatt 616  Q
    ||||||||||||||  ||||||||  ||||||||||||||||| |  |||||| ||||||||||||||| || | |||||| ||||||||| ||| ||||    
T  13928349 atttccaaagttta--cttccaaaaattatcatgttgttggctct--atgtttccaagatagttttgatttttactatttgttgattgttagtttctatt 13928444  T
Q  617 cgcaaat 623  Q
     ||||||    
T  13928445 ggcaaat 13928451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 8083389 - 8083427
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaa 8083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 41830338 - 41830300
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 58582 - 58501
Alignment:
Q  236 tattacaaatgagaaagttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 318  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||  ||||||||    
T  58582 tattacaaaagagaaagttagttacaatgtggcaccttaagcctatttata-gcactaactaactagtaactaggtgactaac 58501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 14781148 - 14781229
Alignment:
Q  236 tattacaaatgagaaagttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 318  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||  ||||||||    
T  14781148 tattacaaaagagaaagttagttacaatgtggcaccttaagcctatttata-gcactaactaactagtaactaggtgactaac 14781229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 7785283 - 7785362
Alignment:
Q  169 gaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    |||||||  |||||||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||||||||||    
T  7785283 gaaacattacatccatggaaggaatgaaagaaatatgtcaaagctctttgtattgatggaaattgaatattacaaatgag 7785362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 2547158 - 2547078
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 244  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 51811815 - 51811762
Alignment:
Q  279 tatttataggcactaactaactagtaactatatgactaacatacatctctaata 332  Q
    ||||||||||||||||||||||||||| |||||||| ||| || ||||||||||    
T  51811815 tatttataggcactaactaactagtaagtatatgaccaacgtatatctctaata 51811762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 51811813 - 51811861
Alignment:
Q  284 ataggcactaactaactagtaactatatgactaacatacatctctaata 332  Q
    |||||||||||||||||||||| |||||||| ||| || ||||||||||    
T  51811813 ataggcactaactaactagtaagtatatgaccaacgtatatctctaata 51811861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 21215059 - 21215020
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  21215059 ttgttagtaaacatgacatccatggaaggaatgagagaaa 21215020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 1136235 - 1136313
Alignment:
Q  170 aaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||||| |||||||||||||||||||||||||| | ||||  ||||| |||||||||||| |||||||||||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaatgag 1136313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 3064795 - 3064881
Alignment:
Q  236 tattacaaatgagaaa-gttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacata 321  Q
    |||||| ||||||||| | || |||||||| | || ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  3064795 tattaccaatgagaaaagataattacaatggggcatcttaagcctatttatagccactaactaactagtaactatatgactaacata 3064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 6825508 - 6825588
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 244  Q
    |||||||||||||||||||||||||||||| |||| ||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 6825588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 30689633 - 30689672
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30689633 ttgttaggaaacatggcatccatgaaaggaatgagagaaa 30689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 8655827 - 8655865
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaa 8655865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 782 - 698
Alignment:
Q  164 gttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    ||||||||||||||||||| | ||||||||||||||||   |  |||| |||||||||||||||||| ||||||||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatattaaaaatgag 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 31692845 - 31692937
Alignment:
Q  236 tattacaaatgagaaagttagttacaatgtgac-accttaagcatatttataggcactaactaactagtaactatatgactaacatacatctc 327  Q
    |||| |||||||||||||| |||||||| | || |||| || | |||||||||||||||||||||||||||||| ||||||||| || |||||    
T  31692845 tattgcaaatgagaaagttggttacaatttaactacctcaaacctatttataggcactaactaactagtaactagatgactaacttatatctc 31692937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 43233964 - 43233925
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43233964 ttgttaggaaacatggcatccatggaaggaatgagagaaa 43233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 41949332 - 41949370
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41949332 ttgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 244  Q
    |||||||||||||||||||||||||||||| ||||||||   | ||||  ||||| |||||||| |||| ||||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaa-ctctttctattgatgaaaaaggaatattacaaa 21254206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 21256771 - 21256720
Alignment:
Q  149 tcttttttcattgttgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  21256771 tcttttttcaatgt-gttaggaaacatggcatccatggaaggaaggagagaaa 21256720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 26873161 - 26873199
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaa 26873199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 407 - 447
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaat 202  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  407 ttgttaggaaacaaggcatccatggaaggaatgagagaaat 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 111543 - 111583
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaaat 202  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  111543 ttgttaggaaacatggcatccatggaaggaaggagagaaat 111583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 5690897 - 5690859
Alignment:
Q  162 ttgttaggaaacatggcatccatggaaggaatgagagaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5690897 ttgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 3567484 - 3567572
Alignment:
Q  159 ttgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 248  Q
    |||||| ||| ||||||| ||||| ||||||||| || ||||||  | |||| | ||||||||||||| |||  ||||||||||||||||    
T  3567484 ttgttggtagaaaacatgacatccgtggaaggaaggaaagaaatctaacaaact-ctttgtattgatgaaaatggaatattacaaatgag 3567572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaa 192  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 360 - 322
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 2028 - 2066
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaa 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 144661 - 144741
Alignment:
Q  163 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 244  Q
    ||||||||||||||||||| |||||||||| |||| ||||  | ||||  ||||| ||||||| ||||  ||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaa-ctctttatattgatagaaatggaatattacaaa 144741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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