View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_36 (Length: 332)
Name: NF0917_low_36
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 50201168 - 50200874
Alignment:
| Q |
30 |
gataagatcttaactgattatatccaagaacatggtgaaggatcttggagatctttgccaaagaatgcaggtaaatgattaatgattttgatgatattta |
129 |
Q |
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| T |
50201168 |
gataagatcttaactgattatatccaagaacatggtgaaggatcttggagatctttgccaaagaatgcaggtaaatgattaatgattttgatgatattta |
50201069 |
T |
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| Q |
130 |
aatatgttattgtgtctgatctgagtattnnnnnnnnnnnnaaacaaaatgaaatattaggtttgttgagatgtggaaagagttgcagactcagatggat |
229 |
Q |
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| T |
50201068 |
aatatgttattgtgtctgatctgagtat-gtatatatatataaacaaaatgaaatattaggtttgttgagatgtggaaagagttgcagactcagatggat |
50200970 |
T |
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| Q |
230 |
aaactacttaagatcagatgtgaagagaggtaacataactcctcaggaggaagaaatcattgtcaaattgcatgctgttcttggcaacagctaggg |
325 |
Q |
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| T |
50200969 |
aaactacttaagatcagatgtgaagagaggtaacataactcctcaggaggaagaaatcattgtcaaattgcatgctgttcttggtaacaggtaggg |
50200874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 13342974 - 13343099
Alignment:
| Q |
188 |
aggtttgttgagatgtggaaagagttgcagactcagatggataaactacttaagatcagatgtgaagagaggtaacataactcctcaggaggaagaaatc |
287 |
Q |
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||||||||| || ||||| |||||||| ||||| |||||||| ||||| || ||| |||||||||||||||| |||||| | ||||| |||||||||||| |
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| T |
13342974 |
aggtttgttaaggtgtgggaagagttgtagactaagatggatcaactatttgagagcagatgtgaagagaggaaacatatcccctcatgaggaagaaatc |
13343073 |
T |
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| Q |
288 |
attgtcaaattgcatgctgttcttgg |
313 |
Q |
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| T |
13343074 |
attgtcaagttgcatgctgttcttgg |
13343099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 13342765 - 13342839
Alignment:
| Q |
29 |
agataagatcttaactgattatatccaagaacatggtgaaggatcttggagatctttgccaaagaatgcaggtaa |
103 |
Q |
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|||||| ||||| |||||||| ||| ||||| ||||||||||||||||||| | |||||| ||||| |||||||| |
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| T |
13342765 |
agataaaatcttgactgattacatcaaagaaaatggtgaaggatcttggaggtttttgcctaagaaagcaggtaa |
13342839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 48892676 - 48892603
Alignment:
| Q |
198 |
agatgtggaaagagttgcagactcagatggataaactacttaagatcagatgtgaagagaggtaacataactcc |
271 |
Q |
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| T |
48892676 |
agatgtggaaaaagttgcagactaagatggatgaactatctaagaccagatataaagagaggaaacataactcc |
48892603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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