View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0917_low_39 (Length: 319)
Name: NF0917_low_39
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 310
Target Start/End: Original strand, 14381830 - 14382111
Alignment:
| Q |
29 |
agctttttcccttcccgtcaagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381830 |
agctttttcccttcccgtcaagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagt |
14381929 |
T |
|
| Q |
129 |
tactgttactttttgttgttgtgaatcaattgttgccgtgaaaacaccttcatagttttgcatggtaaaagaagaaagaagaatgctaagtaagagtaaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381930 |
tactgttactttttgttgttgtgaatcaattgttgccgtgaaaacaccttcatagttttgcatggtaaaagaagaaagaagaatgctaagtaagagtaaa |
14382029 |
T |
|
| Q |
229 |
cctaaaaagatttgaaatttgaagctagtaagagtaaaagtaccatcaatgcgctttaaaattttctttactttctctctgc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14382030 |
cctaaaaagatttgaaatttgaagctagtaagagtaaaagtaccatcaatgcgctttaaaactttctttactttctttctgc |
14382111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 49654190 - 49654075
Alignment:
| Q |
48 |
aagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagttactgttactttttgttgt |
147 |
Q |
| |
|
||||||||||||| ||| ||| |||| |||||||||||| | || ||||||| || ||||| | | |||||||||| || ||||||||||| | ||| |
|
|
| T |
49654190 |
aagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgactgttactttattctgt |
49654091 |
T |
|
| Q |
148 |
tgtgaatcaattgttg |
163 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
49654090 |
tgtggatcgattgttg |
49654075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 576 times since January 2019
Visitors: 6705