View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_4 (Length: 626)
Name: NF0917_low_4
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 30 - 626
Target Start/End: Original strand, 35696171 - 35696767
Alignment:
| Q |
30 |
agaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcat |
129 |
Q |
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| T |
35696171 |
agaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcat |
35696270 |
T |
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| Q |
130 |
tatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaag |
229 |
Q |
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| T |
35696271 |
tatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaag |
35696370 |
T |
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| Q |
230 |
acctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaa |
329 |
Q |
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| T |
35696371 |
acctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaa |
35696470 |
T |
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| Q |
330 |
ccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctc |
429 |
Q |
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| T |
35696471 |
ccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctc |
35696570 |
T |
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| Q |
430 |
cgtgatgttctcattggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgac |
529 |
Q |
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| T |
35696571 |
cgtgatgttctcattggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgac |
35696670 |
T |
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| Q |
530 |
cttctggtcgtccacaagggattcttaacattggtgttaatgttgtcgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggc |
626 |
Q |
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| T |
35696671 |
cttctggtcgtccacaagggattcttaacattggtgttaatgttgttgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggc |
35696767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
337 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
436 |
Q |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
437 |
ttctcattggaac |
449 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 614
Target Start/End: Complemental strand, 47725359 - 47725280
Alignment:
| Q |
535 |
ggtcgtccacaagggattcttaacattggtgttaatgttg-tcgatgctacgatgagaagcatgccgatgtattcggagct |
614 |
Q |
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| T |
47725359 |
ggtcgtccacaagggattcttaacatcggtgtt-acgttgctcgatagcacgatgagaagcatgccactttattcggagct |
47725280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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