View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_40 (Length: 314)
Name: NF0917_low_40
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1464261 - 1464025
Alignment:
| Q |
1 |
aaaatatgaaacaattagataaaaggnnnnnnnntgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccc |
100 |
Q |
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| T |
1464261 |
aaaatatgaaacaattagataaaaggaaaaaaaatgcaagtgcacgaggctatcagcaagcggagtatggacaaggtagatatgtacgcggccttatccc |
1464162 |
T |
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| Q |
101 |
tgcaaacagataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464161 |
tgcaaacagataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagt |
1464062 |
T |
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| Q |
201 |
gaaaaggaaaataacctaccttgttttccaagatatt |
237 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
1464061 |
gaaaaagaaaataacctaccttgttttccaagatatt |
1464025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 26791937 - 26791741
Alignment:
| Q |
35 |
tgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaaca |
134 |
Q |
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||||||||||||||||| | ||||| ||||| ||| ||||||||| | ||| ||||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
26791937 |
tgcaagtgcacgaggctcccgtcaagaggagttcggagaaggtagatgt---cgcagccttatccctacaagcagatatactatttccaatatttgaaca |
26791841 |
T |
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| Q |
135 |
taagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaagga--aaataacctaccttgttttccaag |
232 |
Q |
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| T |
26791840 |
t--gtgaacaaccttagagttgcgccaaggctcgtccttatcaac---gtgaccaaatgataaagcgaaaataaataaaaaatctaccttgttttccaaa |
26791746 |
T |
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