View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_41 (Length: 313)
Name: NF0917_low_41
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 16622427 - 16622561
Alignment:
| Q |
98 |
acatgcagtacctactctcgtgtaatccctaccatacttgta-tgttctatccatacacactcaaagcaaggcacgctaaagcattgaaaacataggcaa |
196 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16622427 |
acatgcagtacctactctcgtgcaatcccttccatacttgtaatgttctatccatacacactcaaagcaaggcacgctaaagcattgaaaacataggcaa |
16622526 |
T |
|
| Q |
197 |
ggaaaaagagaattgtacctgcacaaagtattatc |
231 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
16622527 |
ggaaaaagagaattgtacctgcacaaagtactatc |
16622561 |
T |
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