View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_47 (Length: 297)
Name: NF0917_low_47
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 42310628 - 42310448
Alignment:
| Q |
70 |
cataggaatgtaaataggcgttttcatcattgaaattataaaagttgatcaaatctgcaaaataacattttagtcctttaatcaaaatatttcttttgta |
169 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42310628 |
cataggaatgtaaataggcgttttcatcgttgaaat-ataaaagttgatcaaatctgcaaaataacattttagtcctttaatcaaaatatttcttttgta |
42310530 |
T |
|
| Q |
170 |
aatatctatctgtt-caatgtgactcaaaaattgagtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtcac |
250 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42310529 |
aatatctatctgttgcaatgtgactcaaaaattgagtttggagaaagtgaagaatcgtgacacgattcttatggcgtgtcac |
42310448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 42926497 - 42926562
Alignment:
| Q |
184 |
caatgtgactcaaaaatt-gagtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtca |
249 |
Q |
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| T |
42926497 |
caatttgactcaaaaatttgaatttg-agaaagtgaagaatcgtgacacgattcttatggcgtgtca |
42926562 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 24968694 - 24968760
Alignment:
| Q |
184 |
caatgtgactcaaaaattgagtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtcac |
250 |
Q |
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| T |
24968694 |
caatgtgactcaaaaattgagtttggataaagtgaagaatcgtgacacgattcttatggcttgtcac |
24968760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 17674037 - 17674105
Alignment:
| Q |
184 |
caatgtgactcaaaaattga-gtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtcaca |
251 |
Q |
| |
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|||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
17674037 |
caatttgactcaaaaattgaagtttggaaaaagtgaagaatcgtgacacgattcttatggcgtgtcaca |
17674105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 17628961 - 17629028
Alignment:
| Q |
184 |
caatgtgactcaaaaattg-agtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtcac |
250 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||| |
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|
| T |
17628961 |
caatttgactcaaaaattggagtttggagaaagtgaagaatcatgacacgattcttatggtgtgtcac |
17629028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 48491194 - 48491231
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtgacacga |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
48491194 |
aaaattgagtttggagaaagtgaagaatcgtgacacga |
48491231 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 48489026 - 48489061
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtgacacg |
232 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
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| T |
48489026 |
aaaattgagtttggagaaagtgaagaa-cgtgacacg |
48489061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 44331164 - 44331199
Alignment:
| Q |
197 |
aaattgagtttggagaaagtgaagaatcgtgacacg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
44331164 |
aaattgagtttggagaaagtgaagaatcgtgacacg |
44331199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 31340843 - 31340797
Alignment:
| Q |
186 |
atgtgactcaaaaattgagtttggagaaagtgaagaatcgtgacacga |
233 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||||||||| |
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|
| T |
31340843 |
atgtgactcaaaaatggattttg-agaaagtgaagaatcgtgacacga |
31340797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 44332010 - 44331979
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
44332010 |
aaaattgagtttggagaaagtgaagaatcgtg |
44331979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 4731253 - 4731290
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtgacacga |
233 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4731253 |
aaaattgagtttagagaaagtgaagaatcgtgacacga |
4731290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 10929392 - 10929453
Alignment:
| Q |
189 |
tgactcaaaaat-tgagtttggagaaagtgaagaatcgtgacacgactcttatggcgtgtcac |
250 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||||||| |||| ||||||||| |||||| |
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|
| T |
10929392 |
tgactcaaaaatatgaatttg-agaaagtgaagaatcgtgatacgattcttatggcatgtcac |
10929453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 4733420 - 4733457
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtgacacga |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
4733420 |
aaaattgagtttgaagaaagtgaagaatcatgacacga |
4733457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 43036036 - 43036073
Alignment:
| Q |
196 |
aaaattgagtttggagaaagtgaagaatcgtgacacga |
233 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
43036036 |
aaaatttagtttggtgaaagtgaagaatcgtgacacga |
43036073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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