View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_64 (Length: 258)
Name: NF0917_low_64
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 18332525 - 18332355
Alignment:
| Q |
1 |
tagagccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctg |
100 |
Q |
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| T |
18332525 |
tagagccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattagg-aaaactcctattctg |
18332427 |
T |
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| Q |
101 |
ttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatgt |
172 |
Q |
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| T |
18332426 |
ttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagtaggagaatgt |
18332355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 29800464 - 29800298
Alignment:
| Q |
6 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
105 |
Q |
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| T |
29800464 |
ccgagccgtatgctatataaaagagatgcctgtacggctttaaattgaatttcttttttatatgccctccaagattaggaaaaactcctattctgttaga |
29800365 |
T |
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| Q |
106 |
ctctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaagcgggagaatgt |
172 |
Q |
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| T |
29800364 |
ctctcagctcagggtaatgatccatcaacttgctacttctttgtatgagggacaagtaggagaatgt |
29800298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 2399078 - 2399131
Alignment:
| Q |
120 |
taatgatccatcaa-cctgctacttctttgtatgagggacaagcgggagaatgt |
172 |
Q |
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| T |
2399078 |
taatgatccattaaacctaccacttctttgtatgagggacaagcaggagaatgt |
2399131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 7959024 - 7958950
Alignment:
| Q |
85 |
aaaaactcctattctgttagactctcagctcagggtaatgatccatcaacctgctacttctttgtatgagggacaag |
161 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7959024 |
aaaaacccctattctgttagactctcaggg--gggtaatgatccaccaacctgctacttctttgtatgagggacaag |
7958950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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