View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_66 (Length: 253)
Name: NF0917_low_66
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26003400 - 26003171
Alignment:
| Q |
1 |
tccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttact |
100 |
Q |
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| T |
26003400 |
tccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttact |
26003301 |
T |
|
| Q |
101 |
aagttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataatcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26003300 |
aagttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagtcctataccttttcccataatcca |
26003201 |
T |
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| Q |
201 |
tctgaagctaagattaaaaagtcatgatga |
230 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
26003200 |
tctgaagctaagattaacaagtcatgatga |
26003171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26018136 - 26017917
Alignment:
| Q |
1 |
tccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttact |
100 |
Q |
| |
|
|||||||||||||||| || |||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26018136 |
tccttgtctattgctctctacacataaaggaccagcaagatctacagcttcttgattactaacctgaacaagattgaaaagagaaactaaatcagttact |
26018037 |
T |
|
| Q |
101 |
aagttaagactaaactatagttgaactg--tgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataatc |
198 |
Q |
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|||| | || |||||||||| | |||| || ||||| | |||| ||||||||||| | |||| |||||||||||||||||||| |
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| T |
26018036 |
cgtttaatagta--ctatagttgagcaaattgatctcatgaaaaga----------acattgcaattaattgatgaagtcctataccttttcccataatc |
26017949 |
T |
|
| Q |
199 |
catctgaagctaagattaaaaagtcatgatga |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26017948 |
catctgaagctaagattaaaaagtcatgatga |
26017917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 30374471 - 30374427
Alignment:
| Q |
182 |
taccttttcccataatccatctgaagctaagattaaaaagtcatg |
226 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatg |
30374427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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