View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_67 (Length: 253)
Name: NF0917_low_67
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26003376 - 26003598
Alignment:
| Q |
1 |
ttgtgcagggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatc |
100 |
Q |
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| T |
26003376 |
ttgtgcagggagcaatagacaaggatccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatc |
26003475 |
T |
|
| Q |
101 |
atcaaactacaaaactacatttgaagtttcattaaaacaaacacagacaactaacacgacaccagttataatttagtaaaatgaatgtaattacatgttc |
200 |
Q |
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||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26003476 |
atcaaactacagaactacgtttgaagtttcattaatacaaacacagacgactaacacgacaccag-tataatttagtaaaatgaatgtaattacatgttc |
26003574 |
T |
|
| Q |
201 |
agtgcccgatatcaatgtatgttg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26003575 |
agtgcccgatatcaatgtatgttg |
26003598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 26018121 - 26018238
Alignment:
| Q |
10 |
gagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaacta |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || |
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| T |
26018121 |
gagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgataatcaaatta |
26018220 |
T |
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| Q |
110 |
caaaactacatttgaagt |
127 |
Q |
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|||||||||||||||||| |
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| T |
26018221 |
caaaactacatttgaagt |
26018238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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