View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_68 (Length: 252)
Name: NF0917_low_68
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_68 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 20982679 - 20982601
Alignment:
| Q |
8 |
ccaacaatattatttctactttgacgaatttcattgtcaagtatataaaacttgaaattgaaagtactaacgacaaata |
86 |
Q |
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| T |
20982679 |
ccaacaatattatttctactttgacgaatttcattgtcaagtatataaaacttgaaattgaaagtactaacaacaaata |
20982601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 20982329 - 20982256
Alignment:
| Q |
179 |
tccagagctcaccaaagtcggagtagacctcaaaactcagagaacacttgccgaagtacttacagtttgcccat |
252 |
Q |
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| T |
20982329 |
tccagagctcaccaaagtcggagtagacctcaaaactcagagaacacttgcagaagtatttacagtttgcccat |
20982256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 42054760 - 42054712
Alignment:
| Q |
9 |
caacaatattatttctactttgacgaatttcattgtcaagtatataaaa |
57 |
Q |
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| T |
42054760 |
caacaataatatttccacttcgacgaatttcattgtcaagtatataaaa |
42054712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 49067295 - 49067342
Alignment:
| Q |
71 |
gtactaacgacaaatacatcacctacctcagcacactgttcttcaatt |
118 |
Q |
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| T |
49067295 |
gtactaatgaaaaatataccacctacctcagcacactgttcttcaatt |
49067342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 53790 - 53820
Alignment:
| Q |
34 |
aatttcattgtcaagtatataaaacttgaaa |
64 |
Q |
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| T |
53790 |
aatttcattgtcaagtatataaaacttgaaa |
53820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 19281 - 19244
Alignment:
| Q |
20 |
tttctactttgacgaatttcattgtcaagtatataaaa |
57 |
Q |
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| T |
19281 |
tttctactttaacgaatttcattgtcaaatatataaaa |
19244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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