View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_69 (Length: 251)

Name: NF0917_low_69
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_69
NF0917_low_69
[»] chr4 (11 HSPs)
chr4 (1-222)||(41545297-41545518)
chr4 (13-132)||(19482490-19482609)
chr4 (5-136)||(24060544-24060675)
chr4 (5-133)||(42504203-42504328)
chr4 (13-99)||(29065295-29065381)
chr4 (5-136)||(37762773-37762906)
chr4 (12-107)||(25817662-25817757)
chr4 (6-118)||(5288508-5288620)
chr4 (67-125)||(41485716-41485774)
chr4 (61-136)||(2765433-2765505)
chr4 (59-132)||(16528535-16528608)
[»] chr2 (16 HSPs)
chr2 (5-136)||(20142936-20143067)
chr2 (5-137)||(37714390-37714522)
chr2 (5-136)||(13716719-13716850)
chr2 (5-137)||(38320209-38320341)
chr2 (6-132)||(3167868-3167994)
chr2 (5-136)||(32976029-32976162)
chr2 (6-127)||(35457378-35457498)
chr2 (37-141)||(37899544-37899648)
chr2 (5-136)||(19945733-19945864)
chr2 (5-127)||(31645105-31645229)
chr2 (5-99)||(27007174-27007268)
chr2 (5-118)||(27407408-27407521)
chr2 (5-99)||(14131161-14131255)
chr2 (59-135)||(24183940-24184016)
chr2 (6-131)||(4434270-4434398)
chr2 (87-136)||(31845403-31845452)
[»] chr6 (6 HSPs)
chr6 (5-136)||(2130501-2130632)
chr6 (5-136)||(34713469-34713600)
chr6 (5-131)||(32871762-32871888)
chr6 (5-136)||(6784711-6784842)
chr6 (5-136)||(28867153-28867284)
chr6 (5-132)||(11301808-11301935)
[»] chr1 (12 HSPs)
chr1 (5-132)||(35412998-35413125)
chr1 (5-118)||(26469930-26470043)
chr1 (5-136)||(21540042-21540173)
chr1 (5-136)||(29657332-29657463)
chr1 (6-127)||(10061569-10061690)
chr1 (5-136)||(43537154-43537288)
chr1 (38-136)||(49313575-49313673)
chr1 (5-136)||(23906615-23906746)
chr1 (5-127)||(35149673-35149795)
chr1 (25-133)||(11469994-11470103)
chr1 (60-141)||(48852606-48852687)
chr1 (6-54)||(4684518-4684566)
[»] chr8 (9 HSPs)
chr8 (5-141)||(38585097-38585233)
chr8 (5-136)||(5718456-5718595)
chr8 (6-99)||(26415557-26415650)
chr8 (5-140)||(24068126-24068260)
chr8 (7-136)||(29414352-29414479)
chr8 (60-136)||(29543676-29543752)
chr8 (5-136)||(5686299-5686437)
chr8 (88-134)||(35393710-35393756)
chr8 (25-99)||(43063881-43063955)
[»] chr5 (9 HSPs)
chr5 (5-136)||(3040269-3040400)
chr5 (5-136)||(30071739-30071870)
chr5 (6-136)||(25493787-25493917)
chr5 (5-136)||(30735330-30735461)
chr5 (51-136)||(40519147-40519232)
chr5 (5-136)||(30700879-30701008)
chr5 (57-135)||(24402009-24402090)
chr5 (67-141)||(21259181-21259255)
chr5 (6-55)||(20359962-20360011)
[»] chr3 (9 HSPs)
chr3 (5-136)||(1632777-1632907)
chr3 (4-99)||(18271971-18272066)
chr3 (5-99)||(26442954-26443048)
chr3 (5-136)||(45852943-45853074)
chr3 (5-137)||(34905813-34905945)
chr3 (38-138)||(40840690-40840792)
chr3 (6-136)||(48897690-48897820)
chr3 (5-112)||(2671895-2672002)
chr3 (60-127)||(10593524-10593591)
[»] chr7 (11 HSPs)
chr7 (5-136)||(20125558-20125689)
chr7 (5-136)||(21882778-21882909)
chr7 (6-136)||(8123659-8123789)
chr7 (6-136)||(46297581-46297711)
chr7 (5-135)||(22631449-22631579)
chr7 (5-128)||(23611759-23611881)
chr7 (5-99)||(46413752-46413849)
chr7 (5-133)||(23730514-23730640)
chr7 (5-85)||(1985025-1985105)
chr7 (25-136)||(24250483-24250594)
chr7 (13-127)||(19511387-19511501)
[»] scaffold0122 (1 HSPs)
scaffold0122 (5-136)||(18602-18733)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-127)||(69946-70056)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41545518 - 41545297
Alignment:
Q  1 taaagtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||| |||||||||| |||||| ||||||||||||||||    
T  41545518 taaagtatttgctaacacctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgataaat 41545419  T
Q  101 tcttgatgaaaactctctggataaatagcaatgctcgttttgtgttttaaatatgagtgaacaagtataatttaaaccaatggttcacacatgtgctttt 200  Q
    |||||||| ||||||||| ||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41545418 tcttgatggaaactctctagataaatagtaatgctcgttctatgttttaaacatgagtgaacaagtataatttaaaccaatggttcacacatgtgctttt 41545319  T
Q  201 aatgtgcatcatgatatgtatc 222  Q
    ||||||||||||||||||||||    
T  41545318 aatgtgcatcatgatatgtatc 41545297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 19482609 - 19482490
Alignment:
Q  13 taacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaa 112  Q
    ||||||||||| |||||||||||| ||||| | | || |||||| |||||||| |||||||||| ||||| |  |||||||||||||||||| |  ||||    
T  19482609 taacacctttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaa 19482510  T
Q  113 ctctctggataaatagcaat 132  Q
    |||||| |||||||||||||    
T  19482509 ctctctagataaatagcaat 19482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 24060675 - 24060544
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||||| |||| |||||||||||| |||| || | || ||||| | | ||||| |||||||||||| | |||| |||||||||| |||||||    
T  24060675 gtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagacattttcttgatcaattctt 24060576  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||| ||| | |||||||| ||||||||    
T  24060575 gataaaaattctttagataaataacaatgctc 24060544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 42504203 - 42504328
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||| |||||||||||  ||||||| | || ||||||  ||||||| |||||||||| ||||| | ||||||||||| |||||      
T  42504203 gtatttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattggttgaaatcttttcttgatcaattc-- 42504300  T
Q  105 gatgaaaactctctggataaatagcaatg 133  Q
     || |||||||||| ||||||||||||||    
T  42504301 -ataaaaactctctagataaatagcaatg 42504328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 29065295 - 29065381
Alignment:
Q  13 taacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    ||||||||||| |||||||||||| ||||||| | || ||||||  ||||||| ||||||||||  ||||||| |||||||||||||    
T  29065295 taacacctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattgagactttttcttgataaa 29065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 37762906 - 37762773
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgaga--ccttttcttgataaattc 102  Q
    ||||||| |||||| |||| |||||||||||  ||||  | |||| | || |  ||||||| |||||||||| |||| |   | ||||||||||||||||    
T  37762906 gtatttgttaacacttttccttaattacacatcattatttcctttgactttcgtcaaataacaaatttaattggttgtgtggcattttcttgataaattc 37762807  T
Q  103 ttgatgaaaactctctggataaatagcaatgctc 136  Q
    |||||||||||||| | |||||||||||||||||    
T  37762806 ttgatgaaaactctttagataaatagcaatgctc 37762773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 25817757 - 25817662
Alignment:
Q  12 ctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgat 107  Q
    ||||||| |||  |||||||||||| |||||||   || ||||||  ||||||| |||||||||| | ||||||||||||||||| ||||||||||    
T  25817757 ctaacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattcttgat 25817662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 5288620 - 5288508
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    ||||||||||||| |||  |||||||||||| |||| || | || |||| |  ||||||| |||||||||| | |||||| ||||||| || |||||||     
T  5288620 tatttgctaacacatttttttaattacacaccattatctcccttgatttacggcaaataacaaatttaattggctgagacattttcttaatcaattctta 5288521  T
Q  106 atgaaaactctct 118  Q
    || ||| ||||||    
T  5288520 ataaaatctctct 5288508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 41485774 - 41485716
Alignment:
Q  67 aaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaa 125  Q
    |||||||||| | | | ||||||||||||| |||||||||| |||||||||| ||||||    
T  41485774 aaatttaattggcttaaaccttttcttgatcaattcttgataaaaactctctagataaa 41485716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 2765433 - 2765505
Alignment:
Q  61 aataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    ||||| |||||||||| | | ||||||||||||||| || |||| || |||||||||   ||||||||||||||||    
T  2765433 aataacaaatttaattggcttagaccttttcttgatcaactcttaataaaaactctc---ataaatagcaatgctc 2765505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 16528608 - 16528535
Alignment:
Q  59 caaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaat 132  Q
    ||||||| |||||||||| | ||||||||| | ||||| ||||||  || ||| |||||| |||||||||||||    
T  16528608 caaataacaaatttaattggctgagaccttctattgatcaattctaaataaaatctctctagataaatagcaat 16528535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 20143067 - 20142936
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||| |||||||||||| |||||||||||  ||||||||| || |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  20143067 gtattttctaacacctttccttaattacacatcattaccttccttgatttccgccaaataataaatttaattggttgagactttttcttgataaattctt 20142968  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||||||||| |||||||| ||||||||    
T  20142967 gataaaaactctctagataaataacaatgctc 20142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 37714522 - 37714390
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| |||||||||||| |||| || |||| ||||||| ||||||| |||||||||| ||||| |||||||||||||||||  ||    
T  37714522 gtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgataccttttcttgataaatcatt 37714423  T
Q  105 gatgaaaactctctggataaatagcaatgctcg 137  Q
    ||| |||||||||| ||||||||||||||||||    
T  37714422 gataaaaactctctagataaatagcaatgctcg 37714390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 13716719 - 13716850
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||  |||||||||||| ||||||| |||| |||| | |||||| | |||||||||| |||||||| ||||||||||||||||||    
T  13716719 gtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaattctt 13716818  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||||||||| |||||||||||||||||    
T  13716819 gataaaaactctctagataaatagcaatgctc 13716850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 38320209 - 38320341
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| |||||| |||| ||| |||||||  ||||||| |||| ||||||||||||||| |||||||||| ||||| | |||||||||||||||||||    
T  38320209 gtatttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaacttttcttgataaattctt 38320308  T
Q  105 gatgaaaactctctggataaatagcaatgctcg 137  Q
    ||| |||||||||| |||||||| | |||||||    
T  38320309 gataaaaactctctagataaataacgatgctcg 38320341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 3167994 - 3167868
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    |||||||||||||||||| |||||||||||  |||||||||||| ||||||  |||||||||||||||||| |||||||||||||||| | ||||||||     
T  3167994 tatttgctaacacctttctttaattacacatcattaccttctttgatttccgacaaataataaatttaattggttgagaccttttcttaacaaattctta 3167895  T
Q  106 atgaaaactctctggataaatagcaat 132  Q
    || |||||| | |  ||||||||||||    
T  3167894 ataaaaactttttaaataaatagcaat 3167868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 32976029 - 32976162
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaatt--accttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattc 102  Q
    |||||| |||||||||||  ||||||||| || |||  ||||||||| ||||||  ||||||| |||||||||| |||||||| |||||||||| |||||    
T  32976029 gtatttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattggttgagacattttcttgatcaattc 32976128  T
Q  103 ttgatgaaaactctctggataaatagcaatgctc 136  Q
    ||||| ||| |||||| ||||||||||| |||||    
T  32976129 ttgataaaatctctctagataaatagcattgctc 32976162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 35457498 - 35457378
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    |||||| |||||| |||| |||||||||||| ||||||| |||| |||||| | |||||||||||||||||  |||| |||||||||| |||||||||||    
T  35457498 tatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaaccttttctt-ataaattcttg 35457400  T
Q  106 atgaaaactctctggataaata 127  Q
    || |||||||| || |||||||    
T  35457399 ataaaaactctatgcataaata 35457378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 37899544 - 37899648
Alignment:
Q  37 aattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    |||||||| |||| |||| |  ||||| | |||||||||| ||||| |||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  37899544 aattacctcctttgattttcgacaaatcacaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagcaatgctc 37899643  T
Q  137 gtttt 141  Q
     ||||    
T  37899644 ttttt 37899648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 19945733 - 19945864
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||| | ||||| |||||||||||| ||||||| | |||||||||  ||||||| ||||||||||    ||||| |||| || ||||||||||    
T  19945733 gtatttgttaatatctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattgaccgagacatttttttaataaattctt 19945832  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
     || ||||||||||  ||||||||||||||||    
T  19945833 aataaaaactctctaaataaatagcaatgctc 19945864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 31645105 - 31645229
Alignment:
Q  5 gtatttgctaacacc-tttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttctt-gataaattc 102  Q
    ||||||||||||||| |||  |||||||||||  ||||| ||  || |||||| |||||| | |||||||||| ||| |||| |||| || |||||||||    
T  31645105 gtatttgctaacacccttttcttaattacacatcattacgtttcttgatttccgccaaattaaaaatttaattggttaagacattttttttgataaattc 31645204  T
Q  103 ttgatgaaaactctctggataaata 127  Q
    ||||| |||||||||| ||||||||    
T  31645205 ttgataaaaactctctagataaata 31645229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 27007268 - 27007174
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    ||||||| |||||| |||| |||| ||||||| ||||||| | || |||||| |||||||| ||||||| || ||||||||  ||||||||||||    
T  27007268 gtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaaataacaaatttatttggttgagacaatttcttgataaa 27007174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 27407521 - 27407408
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||| || |||| |||||||||||  |||| |||| || ||||||   |||||| |||||||||| | ||| | ||||||||||| |||||||    
T  27407521 gtatttgctaatacatttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattggctgatatcttttcttgatcaattctt 27407422  T
Q  105 gatgaaaactctct 118  Q
    ||| || |||||||    
T  27407421 gataaacactctct 27407408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 14131255 - 14131161
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    |||||||||||||| |||| |||||||||||| |||| ||   || |||||| |||||||| | |||||||| ||  |||| |||||||||||||    
T  14131255 gtatttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaattggtccagacattttcttgataaa 14131161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 24184016 - 24183940
Alignment:
Q  59 caaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgct 135  Q
    |||||||||||||||||| | ||| |||||||||||||||||| |  || ||||||||||  ||||| | |||||||    
T  24184016 caaataataaatttaattggctgaaaccttttcttgataaattatgaataaaaactctctaaataaacaacaatgct 24183940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 4434398 - 4434270
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttct---ttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattc 102  Q
    ||||||| ||||| |||  |||||||||||| ||||||| ||   || |||| |  ||||||| ||||||||||   || |||||||||||||| |||||    
T  4434398 tatttgccaacacatttacttaattacacaccattacctcctcccttgattttcggcaaataacaaatttaattgactgggaccttttcttgatcaattc 4434299  T
Q  103 ttgatgaaaactctctggataaatagcaa 131  Q
    || || ||| ||||||  |||||||||||    
T  4434298 ttaataaaatctctctcaataaatagcaa 4434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 31845452 - 31845403
Alignment:
Q  87 ttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    ||||||| || |||||||||| ||| ||||||||||||||| ||||||||    
T  31845452 ttttcttaatcaattcttgataaaatctctctggataaataacaatgctc 31845403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 2130501 - 2130632
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||| |||||| |||||||| |||||||||| |||||||  ||||||||||||||| ||    
T  2130501 gtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttgagattttttcttgataaattttt 2130600  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
     || |||||||||| |||||||| ||||||||    
T  2130601 tattaaaactctctagataaataacaatgctc 2130632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 34713600 - 34713469
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||  |||| ||||||| ||||| | | || |||| | |||||||| |||||||||||||||||||  |||||||||||||||||    
T  34713600 gtatttgttaacaccttttcttaaatacacaccattacatcccttgattttcgccaaataacaaatttaattagttgagacaatttcttgataaattctt 34713501  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||||||||||| ||||||||||||||||    
T  34713500 gataaaaactctctgaataaatagcaatgctc 34713469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 32871762 - 32871888
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||| ||||||  |||| |||||||||||| ||||||| | || ||||||  ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  32871762 gtatttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgataaattctt 32871861  T
Q  105 gatgaaaactctctggataaatagcaa 131  Q
    ||| |||||||||| ||||||||||||    
T  32871862 gataaaaactctctagataaatagcaa 32871888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 6784711 - 6784842
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||  |||||||||||| |||| || | || ||||||  ||||||| |||||||||| | ||||| ||||| |||||||||| ||    
T  6784711 gtatttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaattggctgagatcttttattgataaattgtt 6784810  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||||||||| |||||||||||||||||    
T  6784811 gataaaaactctctagataaatagcaatgctc 6784842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 28867284 - 28867153
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||| || |||| ||||||||| || ||||||| |||| ||||||| ||||||| ||||||||||  |||| || ||||||| || |||||||    
T  28867284 gtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaactttttcttaatcaattctt 28867185  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||| |||| | |||||||| ||||||||    
T  28867184 gataaaatctctttagataaataacaatgctc 28867153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 11301935 - 11301808
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||| |||||| ||||| ||||||| | || ||||||||  || |||| |   |||||| ||||| ||||   |||||||||||| |||| |||||||    
T  11301935 gtatttcctaacatctttccttaattatatactattaccttgcttgattttcgagaaataacaaattcaattgactgagaccttttcatgatcaattctt 11301836  T
Q  105 gatgaaaactctctggataaatagcaat 132  Q
    ||| |||| |||||  ||||||||||||    
T  11301835 gataaaaattctctatataaatagcaat 11301808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 35413125 - 35412998
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||| |||||||||||| ||||||| | || ||||||  ||||||| |||||||||| |||||||||||||||||||||||| ||    
T  35413125 gtatttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaattatt 35413026  T
Q  105 gatgaaaactctctggataaatagcaat 132  Q
    ||| |||||||||| |||||||||||||    
T  35413025 gataaaaactctctagataaatagcaat 35412998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 26470043 - 26469930
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||| |||| ||  ||||||||||||||||| |||||||| ||||||||||||||||||    
T  26470043 gtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatttgttgagacattttcttgataaattctt 26469944  T
Q  105 gatgaaaactctct 118  Q
    ||| ||||||||||    
T  26469943 gataaaaactctct 26469930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 21540173 - 21540042
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||| ||||||||||   |||| || | ||||||||| |||||||| |||||||||| | |||||| |||||||||||| |||||    
T  21540173 gtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacattttcttgataatttctt 21540074  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||||||||||  ||||||||||||||||    
T  21540073 gataaaaactctctaaataaatagcaatgctc 21540042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 29657463 - 29657332
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| ||||||||| |  ||||||| |||| |||| |  ||||||| |||||||||| ||||||||||||||||||  |||| ||    
T  29657463 gtatttgctaacacctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttgagaccttttcttgaccaattttt 29657364  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||| |||||| ||||||||| |||||||    
T  29657363 gataaaatctctctagataaataggaatgctc 29657332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 10061690 - 10061569
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    ||||||||||||| |||| |||||||||||  ||||||| | || |||||   ||||||| |||||||||| |||||||| |||| ||||||||||||||    
T  10061690 tatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagacttttttttgataaattcttg 10061591  T
Q  106 atgaaaactctctggataaata 127  Q
    || |||||||||| ||||||||    
T  10061590 ataaaaactctctagataaata 10061569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 43537154 - 43537288
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| |||||| |||| |||||||||||| ||||||| | || ||||||  ||||||| |||||||||| | ||||||||||||||||| |||||||    
T  43537154 gtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagaccttttcttgattaattctt 43537253  T
Q  105 gat---gaaaactctctggataaatagcaatgctc 136  Q
    |||    |||||||||| |||||||| ||||||||    
T  43537254 gataaaaaaaactctctagataaataacaatgctc 43537288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 49313673 - 49313575
Alignment:
Q  38 attaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    |||| ||||||| ||||||  | ||||| ||||||||||| ||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  49313673 attatcttctttgatttccgactaataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactctatggataaatagcaatgctc 49313575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 23906615 - 23906746
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| |||||||||||| |||||||   || ||||    ||||||| |||||||||| | ||| || |||||||||| |||||||    
T  23906615 gtatttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaactttttcttgatcaattctt 23906714  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||| || ||| |||||||||||||||||    
T  23906715 gataaaacctttctagataaatagcaatgctc 23906746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 35149673 - 35149795
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| ||||||| |||  |||| || | || ||||    ||||||| |||||||||| ||| |||  ||||||||||||||||||    
T  35149673 gtatttgctaacacctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatattttcttgataaattctt 35149772  T
Q  105 gatgaaaactctctggataaata 127  Q
    ||| |||||||||| ||||||||    
T  35149773 gataaaaactctctagataaata 35149795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 11470103 - 11469994
Alignment:
Q  25 ttaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgat-gaaaactctctggata 123  Q
    |||||||||||  ||||||| | || |||||| |||||||| |||||||||| ||| |||  |||||||||||||||||| ||  ||||||||||  |||    
T  11470103 ttaattacacatcattacctcccttgatttccgccaaataacaaatttaattggttaagatattttcttgataaattcttaataaaaaactctcttaata 11470004  T
Q  124 aatagcaatg 133  Q
    |||| |||||    
T  11470003 aataacaatg 11469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 48852687 - 48852606
Alignment:
Q  60 aaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctcgtttt 141  Q
    |||||| ||||||||||  || | || |||| ||||||||||||| || |||||||||| |||||||| |||||||| ||||    
T  48852687 aaataacaaatttaattgattaaaacatttttttgataaattcttaataaaaactctctagataaataacaatgctcttttt 48852606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 4684566 - 4684518
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaattt 54  Q
    |||||||||||||||||| |||||||||||| |||| || |||| ||||    
T  4684566 tatttgctaacacctttccttaattacacaccattatctcctttgattt 4684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 38585097 - 38585233
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||||| |||| |||||||||||||||||||| |||| |||||| |||||| | ||||||||||| |||| || ||||||||||||||||||    
T  38585097 gtatttgctaacacttttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaattctt 38585196  T
Q  105 gatgaaaactctctggataaatagcaatgctcgtttt 141  Q
    ||| ||||||||||  ||||||| |||| ||| ||||    
T  38585197 gataaaaactctctaaataaatatcaatactcttttt 38585233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 5718456 - 5718595
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaatt-------agt-tgagaccttttcttgat 96  Q
    |||||||||||||| |||| |||||||||||| ||||||||| || ||||||  ||||||||||||||||||       ||| |||||||||||||||||    
T  5718456 gtatttgctaacacatttccttaattacacaccattaccttccttgatttccgacaaataataaatttaattgactaagagtctgagaccttttcttgat 5718555  T
Q  97 aaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
     |||||||||| ||| |||||  |||||||| ||||||||    
T  5718556 caattcttgataaaatctctcaagataaataccaatgctc 5718595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 26415650 - 26415557
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    |||||||||| ||||||| |||||||||||  |||| ||  ||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  26415650 tatttgctaatacctttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattggttgagaccttttcttgataaa 26415557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 24068126 - 24068260
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||| |||||| ||||| |||||||||||| || |||| |||| ||||    ||||||| |||||||||| | |||||| |||||| ||| |||||||    
T  24068126 gtatttcctaacatctttccttaattacacaccatcacctcctttgattt-tggcaaataacaaatttaattggctgagactttttctcgatcaattctt 24068224  T
Q  105 gatgaaaactctctggataaatagcaatgctcgttt 140  Q
    ||| ||| |||||| |||||||||||||||||||||    
T  24068225 gataaaatctctctagataaatagcaatgctcgttt 24068260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 29414479 - 29414352
Alignment:
Q  7 atttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttga 106  Q
    ||||| ||||||||||| ||||||| |||| ||||||||| || |||| |  ||||||| |||||||||| | |||||| |||||||||| |||| ||||    
T  29414479 atttgttaacacctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaattggctgagacattttcttgatcaatttttga 29414380  T
Q  107 tgaaaactctctggataaatagcaatgctc 136  Q
    | ||||  |||| |||||||||||||||||    
T  29414379 taaaaa--ctctagataaatagcaatgctc 29414352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 29543676 - 29543752
Alignment:
Q  60 aaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    |||||| |||||||||| |||||||  ||||||||||||||| ||||| |||||||||| |||||||| ||||||||    
T  29543676 aaataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaataacaatgctc 29543752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 5686299 - 5686437
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttga--------gaccttttcttgat 96  Q
    |||||||||||||| |||||||||||||| |  ||||||| | || ||||||  ||||||| ||||||||||  ||||        ||||||||||||||    
T  5686299 gtatttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataacaaatttaattgattgagagtttgggaccttttcttgat 5686398  T
Q  97 aaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
     |||||||||| |||  ||||  |||||||||||||||||    
T  5686399 caattcttgat-aaatttctcaagataaatagcaatgctc 5686437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 35393756 - 35393710
Alignment:
Q  88 tttcttgataaattcttgatgaaaactctctggataaatagcaatgc 134  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||    
T  35393756 tttcttgatcaattcttgataaaaactctctagataaatagcaatgc 35393710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 43063881 - 43063955
Alignment:
Q  25 ttaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    ||||||| |||  |||||||| ||| |||| || ||||||||||||||||||   ||||||||||| ||||||||    
T  43063881 ttaattatacatcattaccttatttgattttcaacaaataataaatttaattgactgagacctttttttgataaa 43063955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 3040269 - 3040400
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| |||||||||||| ||||||| | || |||| ||||| |||| ||||||||||  ||||||| ||||||||||||||||||    
T  3040269 gtatttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacattttcttgataaattctt 3040368  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||||||||| | |||||| ||||||||    
T  3040369 gataaaaactctctaggtaaataacaatgctc 3040400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 30071870 - 30071739
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||| |||||| | |||||||||| | |||||||  | ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||     
T  30071870 gtatttgctaactcctttcctcaattacacaccactaccttccatgatttccaacaaataataaatttaattggttgagaccttttcttgttaaattcta 30071771  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||||||| | |||||||||||||||||    
T  30071770 gataaaaactctttagataaatagcaatgctc 30071739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 25493917 - 25493787
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    |||||| ||| || |||| |||||||||||| ||||||| |||| |||||   |||| || |||||||||| | |||||| |||||||||| ||||||||    
T  25493917 tatttgttaatacatttccttaattacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacattttcttgatcaattcttg 25493818  T
Q  106 atgaaaactctctggataaatagcaatgctc 136  Q
    || |||||||||| |||||||||||||||||    
T  25493817 ataaaaactctctagataaatagcaatgctc 25493787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 30735330 - 30735461
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||||| |||  |||||||| ||  ||||||| | || |||||| |||||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  30735330 gtatttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattgattgagacattttcttgatatattctt 30735429  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
     || |||||| ||| |||||||||||||||||    
T  30735430 aataaaaactatctagataaatagcaatgctc 30735461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 40519232 - 40519147
Alignment:
Q  51 atttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctc 136  Q
    ||||||| ||||||| |||||||||| |||||||| | ||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  40519232 atttccatcaaataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagataaatagcaatgctc 40519147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 30700879 - 30701008
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||  |||||||||||  ||||||| | ||||||| |  ||||||| ||||||||||  ||||||| ||||||| ||| ||| ||    
T  30700879 gtatttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgagacattttcttaatatattttt 30700978  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||||  |||| ||||||||| |||||||    
T  30700979 gataaaaa--ctctagataaatagaaatgctc 30701008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 24402090 - 24402009
Alignment:
Q  57 accaaataataaatttaattagttgagaccttttcttgataaattcttgat---gaaaactctctggataaatagcaatgct 135  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||||||||||    ||||||||||  |||||||||||||||    
T  24402090 accaaataacaaatttatttggttgagatcttttcttgataaattcttgataaaaaaaactctctaaataaatagcaatgct 24402009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 21259255 - 21259181
Alignment:
Q  67 aaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatagcaatgctcgtttt 141  Q
    |||||||||||| | | |||||||||| || |||||||||| |||||||||| ||||||||  ||||||| ||||    
T  21259255 aaatttaattagcttaaaccttttctttatcaattcttgataaaaactctctagataaatataaatgctcttttt 21259181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 20360011 - 20359962
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttc 55  Q
    |||||||||||||||||| |||||||||||| |||| || |||| |||||    
T  20360011 tatttgctaacacctttctttaattacacaccattatctcctttgatttc 20359962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 1632907 - 1632777
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| |||||| |||| |||||||||||| ||||||| |||| |||||| | |||||| ||||||||||||||||||| |||||||||| |||| ||    
T  1632907 gtatttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacattttcttgat-aattttt 1632809  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| |||| ||||| |||||||||||| ||||    
T  1632808 gataaaaattctctagataaatagcaaagctc 1632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 18271971 - 18272066
Alignment:
Q  4 agtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    |||||||||||||||||||| |||||||||||| ||||||| | || |||||| |||||||| |||||||||| |||||||  |||||||||||||    
T  18271971 agtatttgctaacacctttctttaattacacaccattacctccattgatttccgccaaataacaaatttaattggttgagatattttcttgataaa 18272066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 26443048 - 26442954
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    ||||||| ||||||||||  |||||||||||| ||||||| | || |||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  26443048 gtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaattggttgagaccttttcttgataaa 26442954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 45852943 - 45853074
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||  ||||||||| |  |||| || | || ||| | | |||||||||||||||||| |||||||| |||||||||| |||||||    
T  45852943 gtatttgctaacaccttttcttaattacatatcattatctcccttgattgcaagcaaataataaatttaattggttgagactttttcttgattaattctt 45853042  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||| |||| | |||||||| ||||||||    
T  45853043 gataaaatctctatagataaataacaatgctc 45853074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 34905945 - 34905813
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||||||||||| ||||||| |||  ||||||| |||| ||||    ||||||| |||||||| | | |||||| ||||||| || |||||||    
T  34905945 gtatttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaactggctgagacattttcttaatcaattctt 34905846  T
Q  105 gatgaaaactctctggataaatagcaatgctcg 137  Q
    ||| ||| || ||| ||||||||||||||||||    
T  34905845 gataaaatctatctagataaatagcaatgctcg 34905813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 40840690 - 40840792
Alignment:
Q  38 attaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaatag--caatgct 135  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||| || |||| |||||||||  ||||| |||| |||||  ||||||||  |||||||    
T  40840690 attacctcctttgatttccgccaaataataaatttaattagttgaaacatttttttgataaatatttgataaaaattctctaaataaatagaccaatgct 40840789  T
Q  136 cgt 138  Q
    |||    
T  40840790 cgt 40840792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 48897690 - 48897820
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    |||||||||||| ||||  |||||||||||| ||||  | | || |||| |  ||||||| |||||||| | | ||| || |||| ||||| ||||||||    
T  48897690 tatttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttg 48897789  T
Q  106 atgaaaactctctggataaatagcaatgctc 136  Q
    || ||| |||||| |||||||||||||||||    
T  48897790 ataaaatctctctagataaatagcaatgctc 48897820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 2672002 - 2671895
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||| ||||| |||||||||||  |||| || || | |||| || | ||||| |||||||||| | ||| ||||||||||||| |||||||    
T  2672002 gtatttgttaacatctttccttaattacacatcattatctcctctgattttcagccaataacaaatttaattggctgacaccttttcttgatcaattctt 2671903  T
Q  105 gatgaaaa 112  Q
    ||| ||||    
T  2671902 gataaaaa 2671895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 10593524 - 10593591
Alignment:
Q  60 aaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataaata 127  Q
    |||||| |||||||||| |||||||| |||||| |||||||||||||| ||| ||||||  |||||||    
T  10593524 aaataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaata 10593591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 20125689 - 20125558
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||||||| ||||||| |||||||||||| |||| |||||||||||||   ||| ||| |||||||||| | ||| || |||||||||| |||||||    
T  20125689 gtatttgctaatacctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacattttcttgatcaattctt 20125590  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
    ||| ||| |||||| ||||||||| |||||||    
T  20125589 gataaaacctctctagataaatagaaatgctc 20125558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 21882778 - 21882909
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||||| |||| |||||||||||| ||||||| | || ||||||  ||||||| |||||||||| | ||||| |||||||| || |||||||    
T  21882778 gtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagatcttttcttaatcaattctt 21882877  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
     || ||| |||||| |||||||||||||||||    
T  21882878 cataaaatctctctagataaatagcaatgctc 21882909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 8123789 - 8123659
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    |||||||||||||||||| ||||||| |||  |||| || | |||||||||| ||||||| ||||||||||   |||||| |||||||||| ||||| ||    
T  8123789 tatttgctaacacctttctttaattatacattattatctccattaatttccaacaaataacaaatttaattgactgagacattttcttgatcaattcatg 8123690  T
Q  106 atgaaaactctctggataaatagcaatgctc 136  Q
    || ||| |||||| |||||||||||||||||    
T  8123689 ataaaatctctctagataaatagcaatgctc 8123659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 46297711 - 46297581
Alignment:
Q  6 tatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttg 105  Q
    ||||||||||||| |||| |||||||||||| |||| || | || |||| |  ||||||| ||||| || | | |||||| |||||||||||||||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttg 46297612  T
Q  106 atgaaaactctctggataaatagcaatgctc 136  Q
    || |||||||||| ||||||||| |||||||    
T  46297611 ataaaaactctctagataaatagtaatgctc 46297581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 22631579 - 22631449
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||| ||||||||||||| |||||||||||| |||| || |||| ||||||  ||||||| |||||||||| | ||||| ||||||||||| |||||||    
T  22631579 gtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaattggctgagatcttttcttgatcaattctt 22631480  T
Q  105 gatgaaaactctctggataaatagcaatgct 135  Q
     || |||  ||| | |||||||| |||||||    
T  22631479 aataaaatatctttagataaataacaatgct 22631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 23611759 - 23611881
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||  |||||||||  || ||||||   || ||||||  ||||||| |||||||||| |||||||| ||||||||||||||||||    
T  23611759 gtatttgttaacacctttacttaattacatcca-ttacctctcttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaattctt 23611857  T
Q  105 gatgaaaactctctggataaatag 128  Q
     || |||||||||| |||||||||    
T  23611858 aataaaaactctctagataaatag 23611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 46413752 - 46413849
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttcc---accaaataataaatttaattagttgagaccttttcttgataaa 99  Q
    ||||||| ||||||||||| |||||||||||  ||||||| | || ||||||   ||||||||| |||||||||| |||||||| |||||||||||||    
T  46413752 gtatttgttaacacctttccttaattacacatcattacctcccttgatttccgccaccaaataacaaatttaattggttgagacattttcttgataaa 46413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 23730514 - 23730640
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    ||||||| ||||||||||| ||||||||||   |||||||   || ||||||  |||||||  ||||||||| | ||| || |||||||||| |||||||    
T  23730514 gtatttgttaacacctttccttaattacacc--attacctctcttgatttccgacaaataacgaatttaatttgctgaaacgttttcttgatcaattctt 23730611  T
Q  105 gatgaaaactctctggataaatagcaatg 133  Q
    ||| ||| |||||| ||||||||||||||    
T  23730612 gataaaatctctctcgataaatagcaatg 23730640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 1985105 - 1985025
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagac 85  Q
    |||||||||||||| |||| ||||||||| || ||||||||| || ||||||  ||||||| |||||||||| | ||||||    
T  1985105 gtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattggctgagac 1985025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 24250483 - 24250594
Alignment:
Q  25 ttaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactctctggataa 124  Q
    ||||||||| || ||||||| | || ||||||  ||||||| ||||| |||| | | ||| ||||||||||| |||||||||| ||| |||| | ||||     
T  24250483 ttaattacaaaccattacctcccttgatttccgacaaataacaaattaaattggataagatcttttcttgatcaattcttgataaaatctctttagatag 24250582  T
Q  125 atagcaatgctc 136  Q
    ||||||||||||    
T  24250583 atagcaatgctc 24250594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 19511501 - 19511387
Alignment:
Q  13 taacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaa 112  Q
    ||||||||||| |||||||| ||| |||| || | || |||||||  ||||||||||||||||| | | | || ||||||| || |||||||||| |||     
T  19511501 taacacctttccttaattactcactattatctccattgatttccaaaaaataataaatttaattggctaaaactttttcttaatcaattcttgataaaat 19511402  T
Q  113 ctctctggataaata 127  Q
    |||||  ||||||||    
T  19511401 ctctcgagataaata 19511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 18733 - 18602
Alignment:
Q  5 gtatttgctaacacctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattctt 104  Q
    |||||||||||||| |||| |||||||| ||| |||| || | ||||||| |  ||||||| ||||||||||   | |||| |||||||||| |||||||    
T  18733 gtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagactttttcttgatcaattctt 18634  T
Q  105 gatgaaaactctctggataaatagcaatgctc 136  Q
     || ||| |||| | |||||||||||||||||    
T  18633 aataaaatctctttagataaatagcaatgctc 18602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 69946 - 70056
Alignment:
Q  17 acctttcattaattacacacaattaccttctttaatttccaccaaataataaatttaattagttgagaccttttcttgataaattcttgatgaaaactct 116  Q
    ||||||| |||||||||| | |||| || | || ||||||  | ||||| |||||||||| | ||| ||||||||||||| |||| | ||| ||||||||    
T  69946 acctttccttaattacaccccattatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactct 70045  T
Q  117 ctggataaata 127  Q
    || ||||||||    
T  70046 ctagataaata 70056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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