View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_74 (Length: 244)

Name: NF0917_low_74
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_74
NF0917_low_74
[»] chr3 (13 HSPs)
chr3 (58-189)||(47424068-47424199)
chr3 (187-221)||(22926035-22926069)
chr3 (187-221)||(43185343-43185377)
chr3 (188-221)||(9794474-9794507)
chr3 (187-220)||(44976302-44976335)
chr3 (187-220)||(47109312-47109345)
chr3 (182-219)||(49610197-49610234)
chr3 (188-221)||(52870686-52870719)
chr3 (187-219)||(23307775-23307807)
chr3 (187-219)||(23609484-23609516)
chr3 (187-219)||(40501125-40501157)
chr3 (187-219)||(40710763-40710795)
chr3 (187-219)||(46336730-46336762)
[»] chr7 (16 HSPs)
chr7 (180-219)||(22369495-22369534)
chr7 (187-221)||(19293043-19293077)
chr7 (187-221)||(23709559-23709593)
chr7 (187-221)||(29669271-29669305)
chr7 (187-221)||(31466047-31466081)
chr7 (181-219)||(32467800-32467838)
chr7 (188-221)||(19866525-19866558)
chr7 (187-219)||(3458583-3458615)
chr7 (187-219)||(10657233-10657265)
chr7 (187-219)||(22326777-22326809)
chr7 (187-219)||(28703542-28703574)
chr7 (178-218)||(31346972-31347012)
chr7 (187-219)||(31502807-31502839)
chr7 (187-219)||(42149843-42149875)
chr7 (185-221)||(47834146-47834182)
chr7 (187-219)||(47988455-47988487)
[»] scaffold0074 (2 HSPs)
scaffold0074 (179-220)||(17449-17490)
scaffold0074 (187-219)||(45580-45612)
[»] chr8 (17 HSPs)
chr8 (187-244)||(15225839-15225896)
chr8 (187-244)||(31692733-31692790)
chr8 (182-217)||(10709353-10709388)
chr8 (187-221)||(18526332-18526366)
chr8 (188-221)||(38194715-38194748)
chr8 (187-219)||(9470806-9470838)
chr8 (187-219)||(9724582-9724614)
chr8 (187-219)||(17949688-17949720)
chr8 (187-219)||(29342705-29342737)
chr8 (187-219)||(31602965-31602997)
chr8 (187-219)||(33012062-33012094)
chr8 (182-210)||(34356776-34356804)
chr8 (187-219)||(37163784-37163816)
chr8 (187-219)||(39628840-39628872)
chr8 (187-219)||(39638390-39638422)
chr8 (187-219)||(42827736-42827768)
chr8 (187-219)||(44263358-44263390)
[»] chr6 (8 HSPs)
chr6 (181-221)||(2010317-2010357)
chr6 (182-221)||(10629565-10629604)
chr6 (188-221)||(3819603-3819636)
chr6 (188-221)||(6335212-6335245)
chr6 (188-221)||(16524766-16524799)
chr6 (188-221)||(34283343-34283376)
chr6 (188-220)||(24053194-24053226)
chr6 (187-219)||(32609791-32609823)
[»] chr1 (19 HSPs)
chr1 (187-244)||(23825226-23825283)
chr1 (187-221)||(2733840-2733874)
chr1 (187-221)||(15170314-15170348)
chr1 (187-221)||(51417615-51417649)
chr1 (187-220)||(290521-290554)
chr1 (188-221)||(51905845-51905878)
chr1 (185-221)||(83154-83190)
chr1 (187-219)||(3163174-3163206)
chr1 (188-220)||(6540713-6540745)
chr1 (187-219)||(7572556-7572588)
chr1 (185-221)||(10656818-10656854)
chr1 (187-219)||(12959547-12959579)
chr1 (187-219)||(13387524-13387556)
chr1 (182-210)||(14794911-14794939)
chr1 (187-219)||(16051899-16051931)
chr1 (187-219)||(17180670-17180702)
chr1 (187-219)||(34022423-34022455)
chr1 (188-220)||(35379764-35379796)
chr1 (187-219)||(46398597-46398629)
[»] scaffold0009 (1 HSPs)
scaffold0009 (188-244)||(8437-8493)
[»] chr5 (11 HSPs)
chr5 (188-244)||(21195261-21195317)
chr5 (187-221)||(5070778-5070812)
chr5 (187-221)||(7458575-7458609)
chr5 (187-221)||(9248927-9248961)
chr5 (187-221)||(39932810-39932844)
chr5 (188-221)||(33903-33936)
chr5 (180-221)||(4431504-4431545)
chr5 (188-221)||(18026148-18026181)
chr5 (188-221)||(24781213-24781246)
chr5 (187-219)||(25538038-25538070)
chr5 (179-215)||(35288105-35288141)
[»] chr2 (23 HSPs)
chr2 (186-221)||(37985522-37985557)
chr2 (188-244)||(40483620-40483676)
chr2 (180-210)||(8247127-8247157)
chr2 (187-221)||(11216591-11216625)
chr2 (187-221)||(16198391-16198425)
chr2 (187-221)||(22154261-22154295)
chr2 (187-221)||(27863049-27863083)
chr2 (186-220)||(33677378-33677412)
chr2 (187-221)||(36845819-36845853)
chr2 (188-221)||(8495278-8495311)
chr2 (188-221)||(17399761-17399794)
chr2 (182-219)||(31072666-31072703)
chr2 (188-221)||(37111250-37111283)
chr2 (188-221)||(38959735-38959768)
chr2 (188-221)||(43521641-43521674)
chr2 (178-210)||(4826553-4826585)
chr2 (187-219)||(4898379-4898411)
chr2 (187-219)||(4945773-4945805)
chr2 (187-219)||(5005272-5005304)
chr2 (181-221)||(8001766-8001806)
chr2 (187-219)||(14309155-14309187)
chr2 (188-220)||(21288851-21288883)
chr2 (188-220)||(32068466-32068498)
[»] scaffold0459 (1 HSPs)
scaffold0459 (187-221)||(11745-11779)
[»] scaffold0366 (1 HSPs)
scaffold0366 (187-221)||(13052-13086)
[»] chr4 (19 HSPs)
chr4 (187-221)||(288343-288377)
chr4 (187-221)||(19877752-19877786)
chr4 (187-221)||(27851166-27851200)
chr4 (187-221)||(54270768-54270802)
chr4 (188-221)||(10125729-10125762)
chr4 (188-221)||(22100915-22100948)
chr4 (188-221)||(23138036-23138069)
chr4 (186-219)||(29832317-29832350)
chr4 (188-221)||(30609228-30609261)
chr4 (188-221)||(37175418-37175451)
chr4 (188-221)||(56235149-56235182)
chr4 (187-219)||(1788844-1788876)
chr4 (188-220)||(16605187-16605219)
chr4 (184-212)||(22843165-22843193)
chr4 (187-219)||(29495013-29495045)
chr4 (187-219)||(34002170-34002202)
chr4 (179-219)||(34016758-34016798)
chr4 (187-219)||(34735918-34735950)
chr4 (187-219)||(41608840-41608872)
[»] scaffold0444 (1 HSPs)
scaffold0444 (188-221)||(7595-7628)
[»] scaffold0262 (1 HSPs)
scaffold0262 (187-220)||(3757-3790)
[»] scaffold0166 (1 HSPs)
scaffold0166 (188-221)||(23596-23629)
[»] scaffold0018 (1 HSPs)
scaffold0018 (186-219)||(151637-151670)
[»] scaffold0154 (1 HSPs)
scaffold0154 (187-219)||(4231-4263)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 47424068 - 47424199
Alignment:
Q  58 tatcataggcaagatcaagtaagtataagggcatttcgggataaagttctcgctacatatagcagtcctcgaaataaaaagttataaaataactcatgaa 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47424068 tatcataggcaagatcaagtaagtataagggcatttcgggataaagttctcgctacatatagcagtcctcgaaataaaaagttataaaataactcatgaa 47424167  T
Q  158 aggatgtaagagatatagagtataaaatgata 189  Q
    ||||||||||||||||||||||||||||||||    
T  47424168 aggatgtaagagatatagagtataaaatgata 47424199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 22926035 - 22926069
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  22926035 atactccctccgtcccaaattgtatgtcgctttgg 22926069  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 43185343 - 43185377
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  43185343 atactccctccgtcccaaattgtatgtcgctttgg 43185377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 9794474 - 9794507
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  9794474 tactccctccgtcccaaattgtatgtcgctttgg 9794507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 44976302 - 44976335
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttg 220  Q
    |||||||||||||||||||||||| |||||||||    
T  44976302 atactccctccgtcccaaattgtatgtcgctttg 44976335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 47109345 - 47109312
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttg 220  Q
    |||||||||||||||||||||||| |||||||||    
T  47109345 atactccctccgtcccaaattgtatgtcgctttg 47109312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 49610234 - 49610197
Alignment:
Q  182 aaatgatactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  49610234 aaatcatactccctccgtcccaaattgtatgtcgcttt 49610197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 52870719 - 52870686
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  52870719 tactccctccgtcccaaattgtatgtcgctttgg 52870686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 23307775 - 23307807
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  23307775 atactccctccgtcccaaattgtatgtcgcttt 23307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 23609516 - 23609484
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  23609516 atactccctccgtcccaaattgtatgtcgcttt 23609484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 40501157 - 40501125
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  40501157 atactccctccgtcccaaattgtatgtcgcttt 40501125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 40710795 - 40710763
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  40710795 atactccctccgtcccaaattgtatgtcgcttt 40710763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 46336730 - 46336762
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  46336730 atactccctccgtcccaaattgtatgtcgcttt 46336762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 22369495 - 22369534
Alignment:
Q  180 taaaatgatactccctccgtcccaaattgtaagtcgcttt 219  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22369495 taaaatgatactccctccgtcccaaattgtatgtcgcttt 22369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 19293043 - 19293077
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  19293043 atactccctccgtcccaaattgtatgtcgctttgg 19293077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 23709559 - 23709593
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  23709559 atactccctccgtcccaaattgtatgtcgctttgg 23709593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 29669271 - 29669305
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  29669271 atactccctccgtcccaaattgtatgtcgctttgg 29669305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 31466047 - 31466081
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  31466047 atactccctccgtcccaaattgtatgtcgctttgg 31466081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 32467800 - 32467838
Alignment:
Q  181 aaaatgatactccctccgtcccaaattgtaagtcgcttt 219  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  32467800 aaaataatactccctccgtcccaaattgtatgtcgcttt 32467838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 19866558 - 19866525
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  19866558 tactccctccgtcccaaattgtatgtcgctttgg 19866525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 3458615 - 3458583
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  3458615 atactccctccgtcccaaattgtatgtcgcttt 3458583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 10657265 - 10657233
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  10657265 atactccctccgtcccaaattgtatgtcgcttt 10657233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 22326809 - 22326777
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  22326809 atactccctccgtcccaaattgtatgtcgcttt 22326777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 28703542 - 28703574
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  28703542 atactccctccgtcccaaattgtatgtcgcttt 28703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 31347012 - 31346972
Alignment:
Q  178 tataaaatgatactccctccgtcccaaattgtaagtcgctt 218  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  31347012 tatataattatactccctccgtcccaaattgtatgtcgctt 31346972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 31502807 - 31502839
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  31502807 atactccctccgtcccaaattgtatgtcgcttt 31502839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 42149875 - 42149843
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    ||||||||||| |||||||||||||||||||||    
T  42149875 atactccctccatcccaaattgtaagtcgcttt 42149843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 47834146 - 47834182
Alignment:
Q  185 tgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||||||| || |||||    
T  47834146 tgatactccctccgtcccaaattgtaagacgttttgg 47834182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 47988487 - 47988455
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  47988487 atactccctccgtcccaaattgtaggtcgcttt 47988455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 17449 - 17490
Alignment:
Q  179 ataaaatgatactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  17449 ataaaattatactccctccgtcccaaattgtatgtcgctttg 17490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 45580 - 45612
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  45580 atactccctccgtcccaaattgtatgtcgcttt 45612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 15225839 - 15225896
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    |||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  15225839 atactccctccgtcccaaattgtatgtcgctttggaaaaaaatttgtcccaaattata 15225896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 31692733 - 31692790
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    |||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  31692733 atactccctccgtcccaaattgtatgtcgctttggaaaaaaatttgtcccaaattata 31692790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 10709388 - 10709353
Alignment:
Q  182 aaatgatactccctccgtcccaaattgtaagtcgct 217  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10709388 aaatgatactccctccgtcccaaattgtatgtcgct 10709353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 18526332 - 18526366
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  18526332 atactccctccgtcccaaattgtatgtcgctttgg 18526366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 38194748 - 38194715
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  38194748 tactccctccgtcccaaattgtatgtcgctttgg 38194715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 9470806 - 9470838
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  9470806 atactccctccgtcccaaattgtatgtcgcttt 9470838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 9724582 - 9724614
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  9724582 atactccctccgtcccaaattgtatgtcgcttt 9724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 17949720 - 17949688
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  17949720 atactccctccgtcccaaattgtatgtcgcttt 17949688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 29342705 - 29342737
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  29342705 atactccctccgtcccaaattgtatgtcgcttt 29342737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 31602997 - 31602965
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  31602997 atactccctccgtcccaaattgtatgtcgcttt 31602965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 33012062 - 33012094
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  33012062 atactccctccgtcccaaattgtatgtcgcttt 33012094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 34356804 - 34356776
Alignment:
Q  182 aaatgatactccctccgtcccaaattgta 210  Q
    |||||||||||||||||||||||||||||    
T  34356804 aaatgatactccctccgtcccaaattgta 34356776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 37163816 - 37163784
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  37163816 atactccctccgtcccaaattgtatgtcgcttt 37163784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 39628840 - 39628872
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  39628840 atactccctccgtcccaaattgtatgtcgcttt 39628872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 39638390 - 39638422
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  39638390 atactccctccgtcccaaattgtatgtcgcttt 39638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 42827768 - 42827736
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  42827768 atactccctccgtcccaaattgtatgtcgcttt 42827736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 44263390 - 44263358
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  44263390 atactccctccgtcccaaattgtatgtcgcttt 44263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 2010357 - 2010317
Alignment:
Q  181 aaaatgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  2010357 aaaatcatactccctccgtcccaaattgtatgtcgctttgg 2010317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 10629604 - 10629565
Alignment:
Q  182 aaatgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  10629604 aaattatactccctccgtcccaaattgtatgtcgctttgg 10629565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 3819603 - 3819636
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||| ||||||||||||||||||||||    
T  3819603 tactccctccggcccaaattgtaagtcgctttgg 3819636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 6335245 - 6335212
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  6335245 tactccctccgtcccaaattgtatgtcgctttgg 6335212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 16524799 - 16524766
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  16524799 tactccctccgtcccaaattgtatgtcgctttgg 16524766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 34283343 - 34283376
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  34283343 tactccctccgtcccaaattgtatgtcgctttgg 34283376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 24053226 - 24053194
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  24053226 tactccctccgtcccaaattgtatgtcgctttg 24053194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 32609791 - 32609823
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  32609791 atactccctccgtcccaaattgtatgtcgcttt 32609823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 23825283 - 23825226
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    |||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  23825283 atactccctccgtcccaaattgtacgtcgctttggaaaaaaatttgtcccaaattata 23825226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 2733840 - 2733874
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  2733840 atactccctccgtcccaaattgtatgtcgctttgg 2733874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 15170348 - 15170314
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  15170348 atactccctccgtcccaaattgtatgtcgctttgg 15170314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 51417649 - 51417615
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  51417649 atactccctccgtcccaaattgtatgtcgctttgg 51417615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 290554 - 290521
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttg 220  Q
    |||||||||||||||||||||||| |||||||||    
T  290554 atactccctccgtcccaaattgtatgtcgctttg 290521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 51905878 - 51905845
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  51905878 tactccctccgtcccaaattgtatgtcgctttgg 51905845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 83190 - 83154
Alignment:
Q  185 tgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  83190 tgatactccctccgtcctaaattgtatgtcgctttgg 83154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 3163174 - 3163206
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  3163174 atactccctccgtcccaaattgtatgtcgcttt 3163206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 6540745 - 6540713
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  6540745 tactccctccgtcccaaattgtatgtcgctttg 6540713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 7572588 - 7572556
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  7572588 atactccctccgtcccaaattgtatgtcgcttt 7572556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 10656854 - 10656818
Alignment:
Q  185 tgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||||  ||||||||||    
T  10656854 tgatactccctccgtcccaaattgtttgtcgctttgg 10656818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 12959579 - 12959547
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  12959579 atactccctccgtcccaaattgtatgtcgcttt 12959547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 13387524 - 13387556
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  13387524 atactccctccgtcccaaattgtatgtcgcttt 13387556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 14794911 - 14794939
Alignment:
Q  182 aaatgatactccctccgtcccaaattgta 210  Q
    |||||||||||||||||||||||||||||    
T  14794911 aaatgatactccctccgtcccaaattgta 14794939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 16051931 - 16051899
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  16051931 atactccctccgtcccaaattgtatgtcgcttt 16051899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 17180670 - 17180702
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  17180670 atactccctccgtcccaaattgtatgtcgcttt 17180702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 34022455 - 34022423
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  34022455 atactccctccgtcccaaattgtatgtcgcttt 34022423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 35379796 - 35379764
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  35379796 tactccctccgtcccaaattgtatgtcgctttg 35379764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 46398597 - 46398629
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  46398597 atactccctccgtcccaaattgtatgtcgcttt 46398629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 8437 - 8493
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    ||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  8437 tactccctccgtcccaaattgtatgtcgctttggaaaaaaatttgtcccaaattata 8493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 21195317 - 21195261
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    ||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  21195317 tactccctccgtcccaaattgtatgtcgctttggaaaaaattttgtcccaaattata 21195261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 5070778 - 5070812
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  5070778 atactccctccgtcccaaattgtatgtcgctttgg 5070812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 7458575 - 7458609
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  7458575 atactccctccgtcccaaattgtatgtcgctttgg 7458609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 9248927 - 9248961
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  9248927 atactccctccgtcccaaattgtatgtcgctttgg 9248961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 39932810 - 39932844
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  39932810 atactccctccgtcccaaattgtatgtcgctttgg 39932844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 33936 - 33903
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  33936 tactccctccgtcccaaattgtatgtcgctttgg 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 4431504 - 4431545
Alignment:
Q  180 taaaatgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||| |||||||||||||||||||||||||| |||| |||||    
T  4431504 taaattgatactccctccgtcccaaattgtatgtcgttttgg 4431545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 18026181 - 18026148
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  18026181 tactccctccgtcccaaattgtatgtcgctttgg 18026148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 24781246 - 24781213
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  24781246 tactccctccgtcccaaattgtatgtcgctttgg 24781213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 25538038 - 25538070
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  25538038 atactccctccgtcccaaattgtatgtcgcttt 25538070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 35288105 - 35288141
Alignment:
Q  179 ataaaatgatactccctccgtcccaaattgtaagtcg 215  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  35288105 ataaaataatactccctccgtcccaaattgtatgtcg 35288141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 37985522 - 37985557
Alignment:
Q  186 gatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37985522 gatactccctccgtcccaaattgtatgtcgctttgg 37985557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 40483676 - 40483620
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttggnnnnnnntttgtcccaaattata 244  Q
    ||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  40483676 tactccctccgtcccaaattgtacgtcgctttggaaaaaaatttgtcccaaattata 40483620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 8247127 - 8247157
Alignment:
Q  180 taaaatgatactccctccgtcccaaattgta 210  Q
    |||||||||||||||||||||||||||||||    
T  8247127 taaaatgatactccctccgtcccaaattgta 8247157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 11216591 - 11216625
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  11216591 atactccctccgtcccaaattgtatgtcgctttgg 11216625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 16198391 - 16198425
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  16198391 atactccctccgtcccaaattgtatgtcgctttgg 16198425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 22154295 - 22154261
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  22154295 atactccctccgtcccaaattgtatgtcgctttgg 22154261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 27863083 - 27863049
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  27863083 atactccctccgtcccaaattgtatgtcgctttgg 27863049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 33677412 - 33677378
Alignment:
Q  186 gatactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||||| |||||||||    
T  33677412 gatactccctccgtcccaaattgtatgtcgctttg 33677378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 36845819 - 36845853
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  36845819 atactccctccgtcccaaattgtatgtcgctttgg 36845853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 8495278 - 8495311
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  8495278 tactccctccgtcccaaattgtatgtcgctttgg 8495311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 17399761 - 17399794
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  17399761 tactccctccgtcccaaattgtatgtcgctttgg 17399794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 31072703 - 31072666
Alignment:
Q  182 aaatgatactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  31072703 aaataatactccctccgtcccaaattgtatgtcgcttt 31072666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 37111283 - 37111250
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  37111283 tactccctccgtcccaaattgtatgtcgctttgg 37111250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 38959735 - 38959768
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  38959735 tactccctccgtcccaaattgtatgtcgctttgg 38959768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 43521674 - 43521641
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  43521674 tactccctccgtcccaaattgtatgtcgctttgg 43521641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 4826585 - 4826553
Alignment:
Q  178 tataaaatgatactccctccgtcccaaattgta 210  Q
    |||||| ||||||||||||||||||||||||||    
T  4826585 tataaagtgatactccctccgtcccaaattgta 4826553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 4898411 - 4898379
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  4898411 atactccctccgtcccaaattgtatgtcgcttt 4898379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 4945805 - 4945773
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  4945805 atactccctccgtcccaaattgtatgtcgcttt 4945773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 5005304 - 5005272
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  5005304 atactccctccgtcccaaattgtatgtcgcttt 5005272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 8001806 - 8001766
Alignment:
Q  181 aaaatgatactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||| ||||||||||||| ||||||| |||||    
T  8001806 aaaatgatactccatccgtcccaaattataagtcgttttgg 8001766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 14309187 - 14309155
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  14309187 atactccctccgtcccaaattgtatgtcgcttt 14309155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 21288851 - 21288883
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  21288851 tactccctccgtcccaaattgtatgtcgctttg 21288883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 32068498 - 32068466
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  32068498 tactccctccgtcccaaattgtatgtcgctttg 32068466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 11779 - 11745
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  11779 atactccctccgtcccaaattgtatgtcgctttgg 11745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 13086 - 13052
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  13086 atactccctccgtcccaaattgtatgtcgctttgg 13052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 288343 - 288377
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  288343 atactccctccgtcccaaattgtatgtcgctttgg 288377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 19877752 - 19877786
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  19877752 atactccctccgtcccaaattgtatgtcgctttgg 19877786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 27851166 - 27851200
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  27851166 atactccctccgtcccaaattgtatgtcgctttgg 27851200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 54270768 - 54270802
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttgg 221  Q
    |||||||||||||||||||||||| ||||||||||    
T  54270768 atactccctccgtcccaaattgtatgtcgctttgg 54270802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 10125762 - 10125729
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  10125762 tactccctccgtcccaaattgtatgtcgctttgg 10125729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 22100915 - 22100948
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  22100915 tactccctccgtcccaaattgtatgtcgctttgg 22100948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 23138036 - 23138069
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  23138036 tactccctccgtcccaaattgtatgtcgctttgg 23138069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 29832350 - 29832317
Alignment:
Q  186 gatactccctccgtcccaaattgtaagtcgcttt 219  Q
    ||||||||||||||||||||||||| ||||||||    
T  29832350 gatactccctccgtcccaaattgtatgtcgcttt 29832317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 30609228 - 30609261
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  30609228 tactccctccgtcccaaattgtatgtcgctttgg 30609261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 37175451 - 37175418
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  37175451 tactccctccgtcccaaattgtatgtcgctttgg 37175418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 56235149 - 56235182
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  56235149 tactccctccgtcccaaattgtatgtcgctttgg 56235182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 1788876 - 1788844
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  1788876 atactccctccgtcccaaattgtatgtcgcttt 1788844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 16605187 - 16605219
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttg 220  Q
    ||||||||||||||||||||||| |||||||||    
T  16605187 tactccctccgtcccaaattgtatgtcgctttg 16605219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 22843193 - 22843165
Alignment:
Q  184 atgatactccctccgtcccaaattgtaag 212  Q
    |||||||||||||||||||||||||||||    
T  22843193 atgatactccctccgtcccaaattgtaag 22843165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 29495045 - 29495013
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  29495045 atactccctccgtcccaaattgtatgtcgcttt 29495013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 34002170 - 34002202
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  34002170 atactccctccgtcccaaattgtatgtcgcttt 34002202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 34016758 - 34016798
Alignment:
Q  179 ataaaatgatactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||| ||||||||||||||||||||||||| ||| ||||    
T  34016758 ataaaaagatactccctccgtcccaaattgtatgtcacttt 34016798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 34735918 - 34735950
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  34735918 atactccctccgtcccaaattgtatgtcgcttt 34735950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 41608872 - 41608840
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  41608872 atactccctccgtcccaaattgtatgtcgcttt 41608840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 7595 - 7628
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  7595 tactccctccgtcccaaattgtatgtcgctttgg 7628  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 3757 - 3790
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgctttg 220  Q
    |||||||||||||||||||||||| |||||||||    
T  3757 atactccctccgtcccaaattgtatgtcgctttg 3790  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 23629 - 23596
Alignment:
Q  188 tactccctccgtcccaaattgtaagtcgctttgg 221  Q
    ||||||||||||||||||||||| ||||||||||    
T  23629 tactccctccgtcccaaattgtatgtcgctttgg 23596  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 151637 - 151670
Alignment:
Q  186 gatactccctccgtcccaaattgtaagtcgcttt 219  Q
    ||||||||||||||||||||||||| ||||||||    
T  151637 gatactccctccgtcccaaattgtatgtcgcttt 151670  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 4263 - 4231
Alignment:
Q  187 atactccctccgtcccaaattgtaagtcgcttt 219  Q
    |||||||||||||||||||||||| ||||||||    
T  4263 atactccctccgtcccaaattgtatgtcgcttt 4231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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