View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_76 (Length: 240)
Name: NF0917_low_76
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26003398 - 26003171
Alignment:
| Q |
1 |
cttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttactaa |
100 |
Q |
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| T |
26003398 |
cttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttactaa |
26003299 |
T |
|
| Q |
101 |
gttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataatccatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26003298 |
gttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagtcctataccttttcccataatccatc |
26003199 |
T |
|
| Q |
201 |
tgaagctaagattaaaaagtcatgatga |
228 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
26003198 |
tgaagctaagattaacaagtcatgatga |
26003171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26018134 - 26017917
Alignment:
| Q |
1 |
cttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttactaa |
100 |
Q |
| |
|
|||||||||||||| || |||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26018134 |
cttgtctattgctctctacacataaaggaccagcaagatctacagcttcttgattactaacctgaacaagattgaaaagagaaactaaatcagttactcg |
26018035 |
T |
|
| Q |
101 |
gttaagactaaactatagttgaactg--tgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataatcca |
198 |
Q |
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|||| | || |||||||||| | |||| || ||||| | |||| ||||||||||| | |||| |||||||||||||||||||||| |
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| T |
26018034 |
tttaatagta--ctatagttgagcaaattgatctcatgaaaaga----------acattgcaattaattgatgaagtcctataccttttcccataatcca |
26017947 |
T |
|
| Q |
199 |
tctgaagctaagattaaaaagtcatgatga |
228 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26017946 |
tctgaagctaagattaaaaagtcatgatga |
26017917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 30374471 - 30374427
Alignment:
| Q |
180 |
taccttttcccataatccatctgaagctaagattaaaaagtcatg |
224 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatg |
30374427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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