View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_79 (Length: 219)
Name: NF0917_low_79
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 17878768 - 17878860
Alignment:
| Q |
1 |
caaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
93 |
Q |
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| T |
17878768 |
caaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
17878860 |
T |
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Back To:
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14772030 - 14772090
Alignment:
| Q |
1 |
caaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaa |
61 |
Q |
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|||||| |||||||||||||||||||| |||||||| || |||| ||||||||||||| |
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| T |
14772030 |
caaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaa |
14772090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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