View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0917_low_8 (Length: 578)

Name: NF0917_low_8
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0917_low_8
NF0917_low_8
[»] chr2 (2 HSPs)
chr2 (39-442)||(44188574-44188985)
chr2 (439-482)||(44189016-44189059)
[»] chr3 (1 HSPs)
chr3 (39-133)||(20609999-20610093)
[»] chr4 (2 HSPs)
chr4 (39-90)||(3240442-3240493)
chr4 (39-107)||(26911610-26911678)
[»] chr8 (4 HSPs)
chr8 (39-90)||(32342775-32342826)
chr8 (39-90)||(32355262-32355313)
chr8 (39-90)||(32359380-32359431)
chr8 (39-90)||(32371916-32371967)
[»] chr1 (1 HSPs)
chr1 (39-90)||(17874738-17874789)
[»] chr5 (1 HSPs)
chr5 (46-90)||(42615054-42615098)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 39 - 442
Target Start/End: Original strand, 44188574 - 44188985
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgattaaacccgggtgagtgcccaaggtagtcgggtggtatctccgcctactc 138  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||    
T  44188574 aagtgagttaatggacaattgggttgaacctaatataaagaaaatatcgattaagcccgggtgagtgtccaagatcgtcgggtggtatctccgcctactc 44188673  T
Q  139 tctccc--------atgatgacgatctttagtcgtgtaaacatgacactatagctagtggggtttataggacaattgcttttaacggttgnnnnnnnata 230  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  44188674 tctccccctctcccatgatgacgatctttagtcgtgtaaacatgacactatagctagtggggtttataggacaattgcttttaacggttgtttttttata 44188773  T
Q  231 aggttcctatagtcactattcgttatatgaatgatcatgatttttaaactcataattctcaaattcaaacctctaataataacaatatttgttctccctc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188774 aggttcctatagtcactattcgttatatgaatgatcatgatttttaaactcataattctcaaattcaaacctctaataataacaatatttgttctccctc 44188873  T
Q  331 ccaaaaatacactaatctccttccctaccaaggttttagtaccttcctcttccttgttacgatcagagatatcacatccatctgcaacttaacatcaaac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188874 ccaaaaatacactaatctccttccctaccaaggttttagtaccttcctcttccttgttacgatcagagatatcacatccatctgcaacttaacatcaaac 44188973  T
Q  431 agttctcttgca 442  Q
    ||||||||||||    
T  44188974 agttctcttgca 44188985  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 44189016 - 44189059
Alignment:
Q  439 tgcatgcatactcgatcaaacactcacgtccaaacacaatactg 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44189016 tgcatgcatactcgatcaaacactcacgtccaaacacaatactg 44189059  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 20610093 - 20609999
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgattaaacccgggtgagtgcccaaggtagtcgggtggtatctccgcc 133  Q
    ||||| ||||||||||||||||| |||||  |||||||||||| |||||||||| | |||| ||||||||  ||| ||||||||||  |||||||    
T  20610093 aagtgggttaatgggctattgggctgaacaaaatataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtggctccgcc 20609999  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 3240442 - 3240493
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||| |||||||||||||||||||| || || |||||||||||||||||||    
T  3240442 aagtgggttaatgggctattgggttggacctagtataaagaaaatatcgatt 3240493  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 26911678 - 26911610
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgattaaacccgggtgagtgcc 107  Q
    ||||||||||| || ||||| |||||  | ||||||||||||||||||||||   |||||| |||||||    
T  26911678 aagtgagttaaaggactattcggttgggcctaatataaagaaaatatcgattgggcccgggcgagtgcc 26911610  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32342826 - 32342775
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||    
T  32342826 aagtgggttaatggactattgggttggacctaatataaagaaagtatcgatt 32342775  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32355313 - 32355262
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||    
T  32355313 aagtgggttaatggactattgggttggacctaatataaagaaagtatcgatt 32355262  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32359431 - 32359380
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||    
T  32359431 aagtgggttaatggactattgggttggacctaatataaagaaagtatcgatt 32359380  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32371967 - 32371916
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||    
T  32371967 aagtgggttaatggactattgggttggacctaatataaagaaagtatcgatt 32371916  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 17874789 - 17874738
Alignment:
Q  39 aagtgagttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    |||||||||||||||||||||||||| || || |||||||||| ||| ||||    
T  17874789 aagtgagttaatgggctattgggttggacctagtataaagaaagtattgatt 17874738  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 42615054 - 42615098
Alignment:
Q  46 ttaatgggctattgggttgaacgtaatataaagaaaatatcgatt 90  Q
    ||||||| ||||||||||||||  |||||||||||| ||||||||    
T  42615054 ttaatggactattgggttgaaccaaatataaagaaagtatcgatt 42615098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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