View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0917_low_81 (Length: 212)
Name: NF0917_low_81
Description: NF0917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0917_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 25217470 - 25217336
Alignment:
| Q |
1 |
ttcctcaaaacttactcgaccatcctataacaaaacaaaacattataaccgatttctaactaatataaccgatttataaccgacttctaacatctatctt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
25217470 |
ttcctcaaaacttactcgaccatcctataacaaaacaaaacattataaccgatttctaactaatataa-cgatttataaccgacttctaacatatatctt |
25217372 |
T |
|
| Q |
101 |
accttatccaagtcgacatcgttgagaatgtctctg |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25217371 |
accttatccaagtcgacatcgttgagaatgtctctg |
25217336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 1969782 - 1969820
Alignment:
| Q |
97 |
tcttaccttatccaagtcgacatcgttgagaatgtctct |
135 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
1969782 |
tcttaccttatccaagtctacatagttgagaatgtctct |
1969820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1969659 - 1969696
Alignment:
| Q |
1 |
ttcctcaaaacttactcgaccatcctataacaaaacaa |
38 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||| |
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|
| T |
1969659 |
ttcctcaaaacttactcgaccattctttaacaaaacaa |
1969696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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